Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 AC011498.5-201ENST00000592027 486 ntBASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 IGHV3-41-201ENST00000613121 348 ntBASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
LIMA1Q9UHB6 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 AC092171.3-201ENST00000610122 2651 ntBASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 AC132938.5-201ENST00000624980 1813 ntBASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LIMA1Q9UHB6 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 AC246785.2-201ENST00000432512 513 ntBASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 STK19B-204ENST00000512515 211 ntBASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 KRT8P26-201ENST00000534154 1276 ntBASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 AD001527.2-201ENST00000622994 785 ntBASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMA1Q9UHB6 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
LIMA1Q9UHB6 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC18.92■□□□□ 0.62
LIMA1Q9UHB6 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIMA1Q9UHB6 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMA1Q9UHB6 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms