Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CCDC28AQ8IWP9 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 PRAL-201ENST00000624952 3286 ntBASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 AC005089.1-201ENST00000619486 2241 ntBASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 OAS3-207ENST00000551007 998 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 AC005252.3-201ENST00000623855 2258 ntBASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC28AQ8IWP9 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
CCDC28AQ8IWP9 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.52□□□□□ -0.08
CCDC28AQ8IWP9 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28AQ8IWP9 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28AQ8IWP9 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28AQ8IWP9 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC14.52□□□□□ -0.08
CCDC28AQ8IWP9 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28AQ8IWP9 AC133963.1-201ENST00000504166 1679 ntBASIC14.52□□□□□ -0.08
CCDC28AQ8IWP9 GOLGA6L3-201ENST00000507199 1679 ntBASIC14.52□□□□□ -0.08
CCDC28AQ8IWP9 OR2I1P-210ENST00000642037 4691 ntBASIC14.52□□□□□ -0.08
CCDC28AQ8IWP9 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.52□□□□□ -0.08
CCDC28AQ8IWP9 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28AQ8IWP9 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
CCDC28AQ8IWP9 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28AQ8IWP9 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28AQ8IWP9 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28AQ8IWP9 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28AQ8IWP9 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28AQ8IWP9 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 SERP1-205ENST00000487153 657 ntTSL 4 BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 AC083906.2-201ENST00000511578 360 ntBASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 AC073347.1-201ENST00000421633 2643 ntBASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 AL391807.1-203ENST00000604392 2365 ntBASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28AQ8IWP9 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 KRT17P1-201ENST00000399211 1546 ntBASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC28AQ8IWP9 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms