Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGCS1Q01581 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGCS1Q01581 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGCS1Q01581 LINC02012-201ENST00000608206 1725 ntBASIC16.75■□□□□ 0.27
HMGCS1Q01581 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGCS1Q01581 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGCS1Q01581 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
HMGCS1Q01581 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGCS1Q01581 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGCS1Q01581 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
HMGCS1Q01581 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGCS1Q01581 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
HMGCS1Q01581 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGCS1Q01581 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGCS1Q01581 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.75■□□□□ 0.27
HMGCS1Q01581 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
HMGCS1Q01581 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGCS1Q01581 AC124067.4-201ENST00000519691 2379 ntBASIC16.74■□□□□ 0.27
HMGCS1Q01581 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.74■□□□□ 0.27
HMGCS1Q01581 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGCS1Q01581 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGCS1Q01581 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGCS1Q01581 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGCS1Q01581 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGCS1Q01581 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
HMGCS1Q01581 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.74■□□□□ 0.27
HMGCS1Q01581 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGCS1Q01581 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGCS1Q01581 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGCS1Q01581 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.74■□□□□ 0.27
HMGCS1Q01581 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HMGCS1Q01581 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.74■□□□□ 0.27
HMGCS1Q01581 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.74■□□□□ 0.27
HMGCS1Q01581 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGCS1Q01581 FAM86EP-206ENST00000510506 987 ntBASIC16.74■□□□□ 0.27
HMGCS1Q01581 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGCS1Q01581 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.74■□□□□ 0.27
HMGCS1Q01581 AP005901.3-202ENST00000581653 237 ntBASIC16.74■□□□□ 0.27
HMGCS1Q01581 AL121672.3-201ENST00000608644 468 ntBASIC16.74■□□□□ 0.27
HMGCS1Q01581 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGCS1Q01581 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGCS1Q01581 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
HMGCS1Q01581 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGCS1Q01581 AC016734.2-201ENST00000624325 1377 ntBASIC16.74■□□□□ 0.27
HMGCS1Q01581 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HMGCS1Q01581 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGCS1Q01581 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
HMGCS1Q01581 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGCS1Q01581 AC005915.1-201ENST00000624912 2018 ntBASIC16.74■□□□□ 0.27
HMGCS1Q01581 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGCS1Q01581 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGCS1Q01581 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGCS1Q01581 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGCS1Q01581 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGCS1Q01581 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGCS1Q01581 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.73■□□□□ 0.27
HMGCS1Q01581 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGCS1Q01581 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGCS1Q01581 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
HMGCS1Q01581 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGCS1Q01581 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGCS1Q01581 CHCHD2P8-201ENST00000429873 447 ntBASIC16.73■□□□□ 0.27
HMGCS1Q01581 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
HMGCS1Q01581 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.73■□□□□ 0.27
HMGCS1Q01581 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.73■□□□□ 0.27
HMGCS1Q01581 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.73■□□□□ 0.27
HMGCS1Q01581 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGCS1Q01581 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.73■□□□□ 0.27
HMGCS1Q01581 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGCS1Q01581 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
HMGCS1Q01581 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.73■□□□□ 0.27
HMGCS1Q01581 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGCS1Q01581 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGCS1Q01581 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGCS1Q01581 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGCS1Q01581 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGCS1Q01581 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGCS1Q01581 AGGF1P2-201ENST00000426656 2106 ntBASIC16.73■□□□□ 0.27
HMGCS1Q01581 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.73■□□□□ 0.27
HMGCS1Q01581 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGCS1Q01581 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGCS1Q01581 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGCS1Q01581 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGCS1Q01581 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.73■□□□□ 0.27
HMGCS1Q01581 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HMGCS1Q01581 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGCS1Q01581 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.72■□□□□ 0.27
HMGCS1Q01581 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGCS1Q01581 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGCS1Q01581 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms