Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC23.77■■□□□ 1.4
MSH6P52701 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC23.77■■□□□ 1.4
MSH6P52701 PGF-202ENST00000405431 666 ntTSL 5 BASIC23.77■■□□□ 1.4
MSH6P52701 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC23.77■■□□□ 1.4
MSH6P52701 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC23.77■■□□□ 1.4
MSH6P52701 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
MSH6P52701 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
MSH6P52701 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
MSH6P52701 AC005412.3-201ENST00000580309 715 ntBASIC23.77■■□□□ 1.4
MSH6P52701 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
MSH6P52701 AC027307.2-201ENST00000591252 911 ntBASIC23.77■■□□□ 1.4
MSH6P52701 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.39
MSH6P52701 BX323043.1-201ENST00000641006 1765 ntBASIC23.77■■□□□ 1.39
MSH6P52701 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.39
MSH6P52701 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC23.76■■□□□ 1.39
MSH6P52701 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH6P52701 TNXA-203ENST00000507684 2038 ntBASIC23.76■■□□□ 1.39
MSH6P52701 CROCCP3-202ENST00000420820 1947 ntBASIC23.76■■□□□ 1.39
MSH6P52701 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
MSH6P52701 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
MSH6P52701 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH6P52701 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH6P52701 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH6P52701 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC23.76■■□□□ 1.39
MSH6P52701 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC23.76■■□□□ 1.39
MSH6P52701 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC23.76■■□□□ 1.39
MSH6P52701 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
MSH6P52701 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC23.76■■□□□ 1.39
MSH6P52701 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC23.76■■□□□ 1.39
MSH6P52701 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
MSH6P52701 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC23.76■■□□□ 1.39
MSH6P52701 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
MSH6P52701 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC23.76■■□□□ 1.39
MSH6P52701 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC23.76■■□□□ 1.39
MSH6P52701 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC23.76■■□□□ 1.39
MSH6P52701 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC23.76■■□□□ 1.39
MSH6P52701 AC046185.3-201ENST00000623228 1824 ntBASIC23.76■■□□□ 1.39
MSH6P52701 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
MSH6P52701 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH6P52701 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
MSH6P52701 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH6P52701 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH6P52701 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH6P52701 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH6P52701 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
MSH6P52701 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
MSH6P52701 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC23.75■■□□□ 1.39
MSH6P52701 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
MSH6P52701 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH6P52701 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH6P52701 AC098614.1-201ENST00000368528 745 ntBASIC23.75■■□□□ 1.39
MSH6P52701 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH6P52701 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
MSH6P52701 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH6P52701 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH6P52701 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC23.75■■□□□ 1.39
MSH6P52701 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH6P52701 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
MSH6P52701 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC23.75■■□□□ 1.39
MSH6P52701 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH6P52701 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
MSH6P52701 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH6P52701 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH6P52701 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH6P52701 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH6P52701 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
MSH6P52701 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH6P52701 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC23.74■■□□□ 1.39
MSH6P52701 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC23.74■■□□□ 1.39
MSH6P52701 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC23.74■■□□□ 1.39
MSH6P52701 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH6P52701 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH6P52701 AC079776.1-201ENST00000401540 1152 ntBASIC23.74■■□□□ 1.39
MSH6P52701 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC23.74■■□□□ 1.39
MSH6P52701 ACA64.2-201ENST00000459014 129 ntBASIC23.74■■□□□ 1.39
MSH6P52701 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC23.74■■□□□ 1.39
MSH6P52701 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC23.74■■□□□ 1.39
MSH6P52701 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC23.74■■□□□ 1.39
MSH6P52701 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC23.74■■□□□ 1.39
MSH6P52701 AL138828.2-201ENST00000615812 383 ntBASIC23.74■■□□□ 1.39
MSH6P52701 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC23.74■■□□□ 1.39
MSH6P52701 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
MSH6P52701 GRAMD4P3-201ENST00000621665 1669 ntBASIC23.74■■□□□ 1.39
MSH6P52701 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
MSH6P52701 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH6P52701 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
MSH6P52701 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH6P52701 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC23.73■■□□□ 1.39
MSH6P52701 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC23.73■■□□□ 1.39
MSH6P52701 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
MSH6P52701 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
MSH6P52701 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH6P52701 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC23.73■■□□□ 1.39
MSH6P52701 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC23.73■■□□□ 1.39
MSH6P52701 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC23.73■■□□□ 1.39
MSH6P52701 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH6P52701 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
MSH6P52701 AC084346.2-201ENST00000607097 949 ntBASIC23.73■■□□□ 1.39
MSH6P52701 MIR6805-201ENST00000615055 62 ntBASIC23.73■■□□□ 1.39
MSH6P52701 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms