Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SOX3P41225 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.38■□□□□ 0.21
SOX3P41225 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.38■□□□□ 0.21
SOX3P41225 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.38■□□□□ 0.21
SOX3P41225 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.38■□□□□ 0.21
SOX3P41225 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SOX3P41225 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SOX3P41225 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
SOX3P41225 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.37■□□□□ 0.21
SOX3P41225 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.37■□□□□ 0.21
SOX3P41225 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
SOX3P41225 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.37■□□□□ 0.21
SOX3P41225 AC096633.1-201ENST00000422446 749 ntBASIC16.37■□□□□ 0.21
SOX3P41225 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.37■□□□□ 0.21
SOX3P41225 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
SOX3P41225 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.37■□□□□ 0.21
SOX3P41225 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.37■□□□□ 0.21
SOX3P41225 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.37■□□□□ 0.21
SOX3P41225 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.37■□□□□ 0.21
SOX3P41225 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
SOX3P41225 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 AC010460.3-201ENST00000511359 1579 ntBASIC16.37■□□□□ 0.21
SOX3P41225 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
SOX3P41225 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
SOX3P41225 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SOX3P41225 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
SOX3P41225 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SOX3P41225 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.36■□□□□ 0.21
SOX3P41225 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.36■□□□□ 0.21
SOX3P41225 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.36■□□□□ 0.21
SOX3P41225 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX3P41225 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.36■□□□□ 0.21
SOX3P41225 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.36■□□□□ 0.21
SOX3P41225 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
SOX3P41225 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX3P41225 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX3P41225 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX3P41225 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX3P41225 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
SOX3P41225 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.36■□□□□ 0.21
SOX3P41225 FAM220CP-201ENST00000395253 831 ntBASIC16.36■□□□□ 0.21
SOX3P41225 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.36■□□□□ 0.21
SOX3P41225 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.36■□□□□ 0.21
SOX3P41225 AF238378.1-201ENST00000526806 358 ntBASIC16.36■□□□□ 0.21
SOX3P41225 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.36■□□□□ 0.21
SOX3P41225 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.36■□□□□ 0.21
SOX3P41225 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SOX3P41225 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.36■□□□□ 0.21
SOX3P41225 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SOX3P41225 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX3P41225 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX3P41225 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
SOX3P41225 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX3P41225 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.36■□□□□ 0.21
SOX3P41225 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
SOX3P41225 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX3P41225 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX3P41225 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX3P41225 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SOX3P41225 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.35■□□□□ 0.21
SOX3P41225 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.35■□□□□ 0.21
SOX3P41225 AC018695.7-201ENST00000624587 2492 ntBASIC16.35■□□□□ 0.21
SOX3P41225 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SOX3P41225 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms