Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
BRCA1P38398 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
BRCA1P38398 SLC25A6P5-201ENST00000435663 894 ntBASIC20.82■□□□□ 0.92
BRCA1P38398 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC20.82■□□□□ 0.92
BRCA1P38398 MIR4525-201ENST00000580000 75 ntBASIC20.82■□□□□ 0.92
BRCA1P38398 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
BRCA1P38398 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
BRCA1P38398 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
BRCA1P38398 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
BRCA1P38398 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC20.82■□□□□ 0.92
BRCA1P38398 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
BRCA1P38398 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.82■□□□□ 0.92
BRCA1P38398 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
BRCA1P38398 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
BRCA1P38398 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.82■□□□□ 0.92
BRCA1P38398 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
BRCA1P38398 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.82■□□□□ 0.92
BRCA1P38398 FAM220BP-201ENST00000377689 816 ntBASIC20.81■□□□□ 0.92
BRCA1P38398 MXI1-205ENST00000393134 889 ntTSL 2 BASIC20.81■□□□□ 0.92
BRCA1P38398 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC20.81■□□□□ 0.92
BRCA1P38398 AC092658.1-201ENST00000505836 891 ntBASIC20.81■□□□□ 0.92
BRCA1P38398 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.81■□□□□ 0.92
BRCA1P38398 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC20.81■□□□□ 0.92
BRCA1P38398 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC20.81■□□□□ 0.92
BRCA1P38398 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
BRCA1P38398 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC20.81■□□□□ 0.92
BRCA1P38398 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
BRCA1P38398 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
BRCA1P38398 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
BRCA1P38398 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
BRCA1P38398 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.81■□□□□ 0.92
BRCA1P38398 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
BRCA1P38398 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.81■□□□□ 0.92
BRCA1P38398 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
BRCA1P38398 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
BRCA1P38398 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
BRCA1P38398 SLC7A15P-201ENST00000424028 1363 ntBASIC20.81■□□□□ 0.92
BRCA1P38398 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
BRCA1P38398 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
BRCA1P38398 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
BRCA1P38398 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
BRCA1P38398 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
BRCA1P38398 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
BRCA1P38398 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.8■□□□□ 0.92
BRCA1P38398 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
BRCA1P38398 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
BRCA1P38398 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC20.8■□□□□ 0.92
BRCA1P38398 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
BRCA1P38398 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
BRCA1P38398 AC098614.1-201ENST00000368528 745 ntBASIC20.8■□□□□ 0.92
BRCA1P38398 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC20.8■□□□□ 0.92
BRCA1P38398 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC20.8■□□□□ 0.92
BRCA1P38398 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC20.8■□□□□ 0.92
BRCA1P38398 AL138918.1-201ENST00000568306 659 ntBASIC20.8■□□□□ 0.92
BRCA1P38398 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC20.8■□□□□ 0.92
BRCA1P38398 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
BRCA1P38398 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
BRCA1P38398 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
BRCA1P38398 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
BRCA1P38398 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC20.79■□□□□ 0.92
BRCA1P38398 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
BRCA1P38398 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC20.79■□□□□ 0.92
BRCA1P38398 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
BRCA1P38398 ARL16-202ENST00000570561 768 ntTSL 2 BASIC20.79■□□□□ 0.92
BRCA1P38398 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
BRCA1P38398 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
BRCA1P38398 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
BRCA1P38398 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
BRCA1P38398 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC20.79■□□□□ 0.92
BRCA1P38398 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC20.79■□□□□ 0.92
BRCA1P38398 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
BRCA1P38398 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
BRCA1P38398 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
BRCA1P38398 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
BRCA1P38398 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
BRCA1P38398 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
BRCA1P38398 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC20.78■□□□□ 0.92
BRCA1P38398 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC20.78■□□□□ 0.92
BRCA1P38398 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC20.78■□□□□ 0.92
BRCA1P38398 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
BRCA1P38398 AC087499.5-201ENST00000452760 1342 ntBASIC20.78■□□□□ 0.92
BRCA1P38398 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC20.78■□□□□ 0.92
BRCA1P38398 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC20.78■□□□□ 0.92
BRCA1P38398 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
BRCA1P38398 DFFBP1-201ENST00000433250 979 ntBASIC20.78■□□□□ 0.92
BRCA1P38398 AL353779.1-201ENST00000434793 351 ntBASIC20.78■□□□□ 0.92
BRCA1P38398 SPDYE18-201ENST00000510091 1050 ntBASIC20.78■□□□□ 0.92
BRCA1P38398 KRT17P8-201ENST00000540749 863 ntBASIC20.78■□□□□ 0.92
BRCA1P38398 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC20.78■□□□□ 0.92
BRCA1P38398 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
BRCA1P38398 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
BRCA1P38398 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.78■□□□□ 0.92
BRCA1P38398 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC20.78■□□□□ 0.92
BRCA1P38398 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
BRCA1P38398 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.78■□□□□ 0.92
BRCA1P38398 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
BRCA1P38398 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
BRCA1P38398 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
BRCA1P38398 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
BRCA1P38398 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms