Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.34■□□□□ 0.37
XRCC1P18887 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.34■□□□□ 0.37
XRCC1P18887 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
XRCC1P18887 KRT8P10-201ENST00000450021 1447 ntBASIC17.34■□□□□ 0.37
XRCC1P18887 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.34■□□□□ 0.37
XRCC1P18887 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.34■□□□□ 0.37
XRCC1P18887 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.34■□□□□ 0.37
XRCC1P18887 KRT8P47-201ENST00000604727 1398 ntBASIC17.34■□□□□ 0.37
XRCC1P18887 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.34■□□□□ 0.37
XRCC1P18887 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
XRCC1P18887 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
XRCC1P18887 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.34■□□□□ 0.37
XRCC1P18887 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
XRCC1P18887 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.33■□□□□ 0.37
XRCC1P18887 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
XRCC1P18887 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
XRCC1P18887 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
XRCC1P18887 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
XRCC1P18887 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
XRCC1P18887 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.33■□□□□ 0.37
XRCC1P18887 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
XRCC1P18887 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
XRCC1P18887 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.33■□□□□ 0.36
XRCC1P18887 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
XRCC1P18887 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
XRCC1P18887 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
XRCC1P18887 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
XRCC1P18887 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
XRCC1P18887 FAM220CP-201ENST00000395253 831 ntBASIC17.33■□□□□ 0.36
XRCC1P18887 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
XRCC1P18887 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.33■□□□□ 0.36
XRCC1P18887 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.33■□□□□ 0.36
XRCC1P18887 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
XRCC1P18887 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.33■□□□□ 0.36
XRCC1P18887 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.33■□□□□ 0.36
XRCC1P18887 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
XRCC1P18887 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.33■□□□□ 0.36
XRCC1P18887 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.33■□□□□ 0.36
XRCC1P18887 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.33■□□□□ 0.36
XRCC1P18887 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
XRCC1P18887 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
XRCC1P18887 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
XRCC1P18887 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
XRCC1P18887 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
XRCC1P18887 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.32■□□□□ 0.36
XRCC1P18887 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
XRCC1P18887 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
XRCC1P18887 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
XRCC1P18887 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.32■□□□□ 0.36
XRCC1P18887 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
XRCC1P18887 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.32■□□□□ 0.36
XRCC1P18887 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
XRCC1P18887 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
XRCC1P18887 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.32■□□□□ 0.36
XRCC1P18887 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.32■□□□□ 0.36
XRCC1P18887 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.32■□□□□ 0.36
XRCC1P18887 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
XRCC1P18887 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.32■□□□□ 0.36
XRCC1P18887 RBM17P3-201ENST00000417687 1192 ntBASIC17.32■□□□□ 0.36
XRCC1P18887 AC106795.1-205ENST00000512851 1056 ntBASIC17.32■□□□□ 0.36
XRCC1P18887 AP002469.2-201ENST00000531724 424 ntBASIC17.32■□□□□ 0.36
XRCC1P18887 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.32■□□□□ 0.36
XRCC1P18887 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.32■□□□□ 0.36
XRCC1P18887 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.32■□□□□ 0.36
XRCC1P18887 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.32■□□□□ 0.36
XRCC1P18887 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
XRCC1P18887 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
XRCC1P18887 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
XRCC1P18887 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
XRCC1P18887 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
XRCC1P18887 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
XRCC1P18887 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
XRCC1P18887 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
XRCC1P18887 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
XRCC1P18887 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
XRCC1P18887 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
XRCC1P18887 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
XRCC1P18887 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.32■□□□□ 0.36
XRCC1P18887 CROCCP2-202ENST00000412962 2773 ntBASIC17.32■□□□□ 0.36
XRCC1P18887 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
XRCC1P18887 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.32■□□□□ 0.36
XRCC1P18887 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
XRCC1P18887 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
XRCC1P18887 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.31■□□□□ 0.36
XRCC1P18887 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.31■□□□□ 0.36
XRCC1P18887 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
XRCC1P18887 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
XRCC1P18887 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.31■□□□□ 0.36
XRCC1P18887 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.31■□□□□ 0.36
XRCC1P18887 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
XRCC1P18887 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
XRCC1P18887 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
XRCC1P18887 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
XRCC1P18887 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
XRCC1P18887 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.31■□□□□ 0.36
XRCC1P18887 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
XRCC1P18887 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
XRCC1P18887 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.31■□□□□ 0.36
XRCC1P18887 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
XRCC1P18887 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms