Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC7.64□□□□□ -1.19
USH2AO75445 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC7.64□□□□□ -1.19
USH2AO75445 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC7.64□□□□□ -1.19
USH2AO75445 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC7.64□□□□□ -1.19
USH2AO75445 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC7.64□□□□□ -1.19
USH2AO75445 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC7.64□□□□□ -1.19
USH2AO75445 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC7.64□□□□□ -1.19
USH2AO75445 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC7.64□□□□□ -1.19
USH2AO75445 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
USH2AO75445 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC7.64□□□□□ -1.19
USH2AO75445 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 AC098850.1-201ENST00000419919 790 ntBASIC7.64□□□□□ -1.19
USH2AO75445 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 CSF2RBP1-201ENST00000447905 391 ntBASIC7.64□□□□□ -1.19
USH2AO75445 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 BANF1P1-201ENST00000553684 263 ntBASIC7.64□□□□□ -1.19
USH2AO75445 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC7.64□□□□□ -1.19
USH2AO75445 RN7SL219P-201ENST00000582872 296 ntBASIC7.64□□□□□ -1.19
USH2AO75445 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC7.64□□□□□ -1.19
USH2AO75445 BTBD7P1-201ENST00000447253 1453 ntBASIC7.64□□□□□ -1.19
USH2AO75445 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC7.64□□□□□ -1.19
USH2AO75445 AC018665.1-201ENST00000622927 1362 ntBASIC7.64□□□□□ -1.19
USH2AO75445 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC7.64□□□□□ -1.19
USH2AO75445 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 FLYWCH1P1-201ENST00000460917 1874 ntBASIC7.64□□□□□ -1.19
USH2AO75445 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC7.64□□□□□ -1.19
USH2AO75445 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC7.64□□□□□ -1.19
USH2AO75445 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC7.64□□□□□ -1.19
USH2AO75445 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC7.64□□□□□ -1.19
USH2AO75445 AC018529.1-201ENST00000613063 361 ntBASIC7.64□□□□□ -1.19
USH2AO75445 RPL35-206ENST00000629845 340 ntTSL 5 BASIC7.64□□□□□ -1.19
USH2AO75445 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC7.64□□□□□ -1.19
USH2AO75445 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC7.64□□□□□ -1.19
USH2AO75445 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC7.64□□□□□ -1.19
USH2AO75445 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC7.64□□□□□ -1.19
USH2AO75445 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC7.64□□□□□ -1.19
USH2AO75445 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 RPL37AP1-201ENST00000412502 279 ntBASIC7.64□□□□□ -1.19
USH2AO75445 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC7.64□□□□□ -1.19
USH2AO75445 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 AC093004.1-201ENST00000508850 424 ntBASIC7.64□□□□□ -1.19
USH2AO75445 AC135586.1-201ENST00000539323 574 ntBASIC7.64□□□□□ -1.19
USH2AO75445 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC7.64□□□□□ -1.19
USH2AO75445 THTPA-204ENST00000554970 569 ntTSL 4 BASIC7.64□□□□□ -1.19
USH2AO75445 THTPA-206ENST00000556015 535 ntTSL 3 BASIC7.64□□□□□ -1.19
USH2AO75445 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC7.64□□□□□ -1.19
USH2AO75445 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
USH2AO75445 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
USH2AO75445 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
USH2AO75445 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
USH2AO75445 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC7.63□□□□□ -1.19
USH2AO75445 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
USH2AO75445 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
USH2AO75445 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC7.63□□□□□ -1.19
USH2AO75445 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
USH2AO75445 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC7.63□□□□□ -1.19
USH2AO75445 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
USH2AO75445 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC7.63□□□□□ -1.19
USH2AO75445 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC7.63□□□□□ -1.19
USH2AO75445 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC7.63□□□□□ -1.19
USH2AO75445 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC7.63□□□□□ -1.19
USH2AO75445 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC7.63□□□□□ -1.19
USH2AO75445 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
USH2AO75445 AL355334.1-201ENST00000417713 215 ntBASIC7.63□□□□□ -1.19
USH2AO75445 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC7.63□□□□□ -1.19
USH2AO75445 AP005482.1-201ENST00000563722 1273 ntBASIC7.63□□□□□ -1.19
USH2AO75445 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC7.63□□□□□ -1.19
USH2AO75445 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
USH2AO75445 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC7.63□□□□□ -1.19
USH2AO75445 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
USH2AO75445 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC7.63□□□□□ -1.19
USH2AO75445 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
USH2AO75445 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
USH2AO75445 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC7.63□□□□□ -1.19
USH2AO75445 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
USH2AO75445 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
USH2AO75445 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
USH2AO75445 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
USH2AO75445 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms