Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDB3O75112 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDB3O75112 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.35■□□□□ 0.21
LDB3O75112 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
LDB3O75112 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.35■□□□□ 0.21
LDB3O75112 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
LDB3O75112 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDB3O75112 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDB3O75112 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.35■□□□□ 0.21
LDB3O75112 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
LDB3O75112 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDB3O75112 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LDB3O75112 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDB3O75112 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDB3O75112 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LDB3O75112 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
LDB3O75112 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDB3O75112 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDB3O75112 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
LDB3O75112 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.34■□□□□ 0.21
LDB3O75112 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDB3O75112 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDB3O75112 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
LDB3O75112 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
LDB3O75112 SCARNA2-201ENST00000458748 420 ntBASIC16.34■□□□□ 0.21
LDB3O75112 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
LDB3O75112 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.34■□□□□ 0.21
LDB3O75112 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.34■□□□□ 0.21
LDB3O75112 AL121894.2-201ENST00000602977 491 ntBASIC16.34■□□□□ 0.21
LDB3O75112 TP73-AS1-207ENST00000624167 988 ntBASIC16.34■□□□□ 0.21
LDB3O75112 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDB3O75112 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDB3O75112 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
LDB3O75112 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LDB3O75112 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDB3O75112 AC108860.2-201ENST00000562760 2183 ntBASIC16.34■□□□□ 0.21
LDB3O75112 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDB3O75112 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDB3O75112 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDB3O75112 AC012313.1-201ENST00000593393 3059 ntBASIC16.34■□□□□ 0.21
LDB3O75112 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDB3O75112 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDB3O75112 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
LDB3O75112 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LDB3O75112 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
LDB3O75112 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
LDB3O75112 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LDB3O75112 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LDB3O75112 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LDB3O75112 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
LDB3O75112 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LDB3O75112 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB3O75112 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LDB3O75112 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.33■□□□□ 0.2
LDB3O75112 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.33■□□□□ 0.2
LDB3O75112 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB3O75112 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.33■□□□□ 0.2
LDB3O75112 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
LDB3O75112 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB3O75112 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.33■□□□□ 0.2
LDB3O75112 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB3O75112 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.33■□□□□ 0.2
LDB3O75112 TPM4P1-201ENST00000436100 807 ntBASIC16.33■□□□□ 0.2
LDB3O75112 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
LDB3O75112 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.33■□□□□ 0.2
LDB3O75112 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.33■□□□□ 0.2
LDB3O75112 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
LDB3O75112 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.33■□□□□ 0.2
LDB3O75112 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.33■□□□□ 0.2
LDB3O75112 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LDB3O75112 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB3O75112 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB3O75112 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.33■□□□□ 0.2
LDB3O75112 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB3O75112 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.33■□□□□ 0.2
LDB3O75112 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.33■□□□□ 0.2
LDB3O75112 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB3O75112 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.33■□□□□ 0.2
LDB3O75112 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDB3O75112 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
LDB3O75112 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LDB3O75112 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LDB3O75112 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
LDB3O75112 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB3O75112 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB3O75112 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB3O75112 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB3O75112 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
LDB3O75112 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB3O75112 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB3O75112 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB3O75112 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB3O75112 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB3O75112 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB3O75112 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB3O75112 FAAHP1-202ENST00000446499 1238 ntBASIC16.32■□□□□ 0.2
LDB3O75112 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.32■□□□□ 0.2
LDB3O75112 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB3O75112 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
LDB3O75112 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms