Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
TRIM38O00635 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM38O00635 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM38O00635 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM38O00635 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM38O00635 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM38O00635 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM38O00635 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM38O00635 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM38O00635 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM38O00635 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM38O00635 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM38O00635 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM38O00635 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.5■□□□□ 0.39
TRIM38O00635 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.5■□□□□ 0.39
TRIM38O00635 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM38O00635 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.5■□□□□ 0.39
TRIM38O00635 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
TRIM38O00635 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM38O00635 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.5■□□□□ 0.39
TRIM38O00635 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM38O00635 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM38O00635 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM38O00635 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM38O00635 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM38O00635 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.49■□□□□ 0.39
TRIM38O00635 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
TRIM38O00635 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.49■□□□□ 0.39
TRIM38O00635 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
TRIM38O00635 GMCL1P1-201ENST00000463439 1581 ntBASIC17.49■□□□□ 0.39
TRIM38O00635 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.49■□□□□ 0.39
TRIM38O00635 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.49■□□□□ 0.39
TRIM38O00635 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.49■□□□□ 0.39
TRIM38O00635 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.49■□□□□ 0.39
TRIM38O00635 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.49■□□□□ 0.39
TRIM38O00635 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
TRIM38O00635 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
TRIM38O00635 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.49■□□□□ 0.39
TRIM38O00635 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
TRIM38O00635 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM38O00635 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM38O00635 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM38O00635 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM38O00635 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM38O00635 PHGDH-209ENST00000641074 1780 ntBASIC17.48■□□□□ 0.39
TRIM38O00635 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM38O00635 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.48■□□□□ 0.39
TRIM38O00635 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM38O00635 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
TRIM38O00635 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM38O00635 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.48■□□□□ 0.39
TRIM38O00635 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.48■□□□□ 0.39
TRIM38O00635 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM38O00635 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM38O00635 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM38O00635 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
TRIM38O00635 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.48■□□□□ 0.39
TRIM38O00635 MIR1233-2-201ENST00000408138 82 ntBASIC17.48■□□□□ 0.39
TRIM38O00635 MIR1233-1-201ENST00000408722 82 ntBASIC17.48■□□□□ 0.39
TRIM38O00635 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.48■□□□□ 0.39
TRIM38O00635 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.48■□□□□ 0.39
TRIM38O00635 AC112698.1-201ENST00000510299 916 ntBASIC17.48■□□□□ 0.39
TRIM38O00635 IGHV3-22-201ENST00000520721 359 ntBASIC17.48■□□□□ 0.39
TRIM38O00635 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.48■□□□□ 0.39
TRIM38O00635 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.48■□□□□ 0.39
TRIM38O00635 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM38O00635 AL356309.3-201ENST00000624132 1934 ntBASIC17.48■□□□□ 0.39
TRIM38O00635 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM38O00635 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM38O00635 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM38O00635 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM38O00635 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
TRIM38O00635 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
TRIM38O00635 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.48■□□□□ 0.39
TRIM38O00635 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM38O00635 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
TRIM38O00635 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM38O00635 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
TRIM38O00635 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
TRIM38O00635 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms