Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 AP000347.1-202ENST00000435868 847 ntBASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 AL049840.3-201ENST00000602669 611 ntBASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 AC025062.2-201ENST00000605477 670 ntBASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 MIR7706-201ENST00000613747 67 ntBASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 AC073592.4-201ENST00000623827 446 ntBASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 FAM215A-202ENST00000632077 792 ntBASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
COL4A3BPQ9Y5P4 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 SPDYE21P-201ENST00000413323 827 ntBASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 RPS2P1-201ENST00000434010 821 ntBASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 BX005266.1-201ENST00000473402 457 ntBASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 AC093909.1-201ENST00000504731 1122 ntBASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 MTDHP4-201ENST00000600287 670 ntBASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 BX640515.1-201ENST00000617215 977 ntBASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
COL4A3BPQ9Y5P4 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 FUT8-AS1-201ENST00000621019 1521 ntBASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 AL022342.1-201ENST00000400363 863 ntBASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 AL590627.1-203ENST00000421194 1026 ntBASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL4A3BPQ9Y5P4 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms