Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC32.8■■■□□ 2.84
SHROOM4Q9ULL8 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC32.79■■■□□ 2.84
SHROOM4Q9ULL8 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
SHROOM4Q9ULL8 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC32.79■■■□□ 2.84
SHROOM4Q9ULL8 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC32.79■■■□□ 2.84
SHROOM4Q9ULL8 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC32.79■■■□□ 2.84
SHROOM4Q9ULL8 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
SHROOM4Q9ULL8 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC32.79■■■□□ 2.84
SHROOM4Q9ULL8 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC32.79■■■□□ 2.84
SHROOM4Q9ULL8 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC32.79■■■□□ 2.84
SHROOM4Q9ULL8 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
SHROOM4Q9ULL8 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
SHROOM4Q9ULL8 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
SHROOM4Q9ULL8 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC32.79■■■□□ 2.84
SHROOM4Q9ULL8 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
SHROOM4Q9ULL8 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC32.79■■■□□ 2.84
SHROOM4Q9ULL8 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
SHROOM4Q9ULL8 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC32.79■■■□□ 2.84
SHROOM4Q9ULL8 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 AC006116.8-202ENST00000587620 1550 ntBASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 INGX-202ENST00000489074 768 ntBASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC32.78■■■□□ 2.84
SHROOM4Q9ULL8 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 UGT1A2P-201ENST00000454886 866 ntBASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 CR383656.12-201ENST00000549567 513 ntBASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 AC012317.2-201ENST00000623305 2251 ntBASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 ABALON-201ENST00000629058 1903 ntBASIC32.77■■■□□ 2.84
SHROOM4Q9ULL8 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC32.76■■■□□ 2.84
SHROOM4Q9ULL8 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC32.76■■■□□ 2.84
SHROOM4Q9ULL8 CXCL1P1-201ENST00000502804 216 ntBASIC32.76■■■□□ 2.84
SHROOM4Q9ULL8 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC32.76■■■□□ 2.84
SHROOM4Q9ULL8 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC32.76■■■□□ 2.84
SHROOM4Q9ULL8 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC32.76■■■□□ 2.83
SHROOM4Q9ULL8 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
SHROOM4Q9ULL8 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC32.76■■■□□ 2.83
SHROOM4Q9ULL8 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC32.76■■■□□ 2.83
SHROOM4Q9ULL8 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC32.75■■■□□ 2.83
SHROOM4Q9ULL8 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC32.75■■■□□ 2.83
SHROOM4Q9ULL8 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC32.75■■■□□ 2.83
SHROOM4Q9ULL8 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
SHROOM4Q9ULL8 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
SHROOM4Q9ULL8 COX11-202ENST00000571584 1108 ntTSL 2 BASIC32.75■■■□□ 2.83
SHROOM4Q9ULL8 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC32.75■■■□□ 2.83
SHROOM4Q9ULL8 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
SHROOM4Q9ULL8 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC32.75■■■□□ 2.83
SHROOM4Q9ULL8 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
SHROOM4Q9ULL8 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC32.75■■■□□ 2.83
SHROOM4Q9ULL8 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC32.75■■■□□ 2.83
SHROOM4Q9ULL8 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC32.75■■■□□ 2.83
SHROOM4Q9ULL8 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
SHROOM4Q9ULL8 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 COMP-202ENST00000425807 2292 ntTSL 2 BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 EDF1-203ENST00000371649 790 ntTSL 2 BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 NABP1-203ENST00000409510 843 ntTSL 5 BASIC32.74■■■□□ 2.83
SHROOM4Q9ULL8 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC32.74■■■□□ 2.83
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms