Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH9Q9HC56 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.96■□□□□ 0.47
PCDH9Q9HC56 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH9Q9HC56 AGGF1P2-201ENST00000426656 2106 ntBASIC17.96■□□□□ 0.47
PCDH9Q9HC56 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH9Q9HC56 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH9Q9HC56 AC125634.1-201ENST00000438758 1403 ntBASIC17.96■□□□□ 0.47
PCDH9Q9HC56 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH9Q9HC56 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH9Q9HC56 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH9Q9HC56 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.96■□□□□ 0.47
PCDH9Q9HC56 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH9Q9HC56 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH9Q9HC56 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.46
PCDH9Q9HC56 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 AL118508.1-201ENST00000613502 2345 ntBASIC17.95■□□□□ 0.46
PCDH9Q9HC56 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 AC093525.9-201ENST00000624961 1746 ntBASIC17.95■□□□□ 0.46
PCDH9Q9HC56 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 KRT17P6-201ENST00000453795 1220 ntBASIC17.95■□□□□ 0.46
PCDH9Q9HC56 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 AL138831.2-201ENST00000606564 490 ntBASIC17.95■□□□□ 0.46
PCDH9Q9HC56 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
PCDH9Q9HC56 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 HCG4P8-203ENST00000443049 980 ntBASIC17.94■□□□□ 0.46
PCDH9Q9HC56 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 AC074051.2-201ENST00000565115 352 ntBASIC17.94■□□□□ 0.46
PCDH9Q9HC56 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH9Q9HC56 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
PCDH9Q9HC56 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms