Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 AC106795.1-205ENST00000512851 1056 ntBASIC17.9■□□□□ 0.46
USP29Q9HBJ7 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
USP29Q9HBJ7 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
USP29Q9HBJ7 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
USP29Q9HBJ7 AC093525.9-201ENST00000624961 1746 ntBASIC17.89■□□□□ 0.46
USP29Q9HBJ7 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
USP29Q9HBJ7 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.89■□□□□ 0.45
USP29Q9HBJ7 AL353593.2-201ENST00000602529 1483 ntBASIC17.89■□□□□ 0.45
USP29Q9HBJ7 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP29Q9HBJ7 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP29Q9HBJ7 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP29Q9HBJ7 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.89■□□□□ 0.45
USP29Q9HBJ7 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP29Q9HBJ7 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP29Q9HBJ7 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
USP29Q9HBJ7 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.89■□□□□ 0.45
USP29Q9HBJ7 STK25P1-201ENST00000585406 838 ntBASIC17.89■□□□□ 0.45
USP29Q9HBJ7 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
USP29Q9HBJ7 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
USP29Q9HBJ7 LINC02012-201ENST00000608206 1725 ntBASIC17.89■□□□□ 0.45
USP29Q9HBJ7 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.89■□□□□ 0.45
USP29Q9HBJ7 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
USP29Q9HBJ7 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 IGHV3-47-201ENST00000425060 335 ntBASIC17.88■□□□□ 0.45
USP29Q9HBJ7 KRT16P4-201ENST00000453883 522 ntBASIC17.88■□□□□ 0.45
USP29Q9HBJ7 AC009533.2-201ENST00000543664 586 ntBASIC17.88■□□□□ 0.45
USP29Q9HBJ7 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 AC011467.2-201ENST00000598425 242 ntBASIC17.88■□□□□ 0.45
USP29Q9HBJ7 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 AC084018.2-201ENST00000613093 2607 ntBASIC17.88■□□□□ 0.45
USP29Q9HBJ7 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
USP29Q9HBJ7 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
USP29Q9HBJ7 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
USP29Q9HBJ7 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
USP29Q9HBJ7 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
USP29Q9HBJ7 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
USP29Q9HBJ7 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
USP29Q9HBJ7 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
USP29Q9HBJ7 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
USP29Q9HBJ7 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
USP29Q9HBJ7 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.87■□□□□ 0.45
USP29Q9HBJ7 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.87■□□□□ 0.45
USP29Q9HBJ7 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
USP29Q9HBJ7 AC009078.2-202ENST00000463353 338 ntBASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms