Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 CD81-202ENST00000381036 880 ntTSL 3 BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 AC092552.1-201ENST00000547243 906 ntBASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 REXO1L6P-201ENST00000603433 1515 ntBASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.46■□□□□ 0.87
SMC1BQ8NDV3 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
SMC1BQ8NDV3 PC-208ENST00000529047 1607 ntTSL 3 BASIC20.45■□□□□ 0.87
SMC1BQ8NDV3 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
SMC1BQ8NDV3 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 DGCR5-201ENST00000399539 862 ntBASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 GRAMD4P3-201ENST00000621665 1669 ntBASIC20.45■□□□□ 0.86
SMC1BQ8NDV3 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 AL499627.1-201ENST00000569373 2188 ntBASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 RPF1-202ENST00000370656 724 ntTSL 2 BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 RPL28-204ENST00000431533 590 ntTSL 2 BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 RPL28-206ENST00000558752 671 ntTSL 3 BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SMC1BQ8NDV3 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
SMC1BQ8NDV3 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms