Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC21.08■□□□□ 0.96
CCDC88AQ3V6T2 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC21.08■□□□□ 0.96
CCDC88AQ3V6T2 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.96
CCDC88AQ3V6T2 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.96
CCDC88AQ3V6T2 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
CCDC88AQ3V6T2 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 PI4KAP1-204ENST00000612579 1703 ntBASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 RBPMS2P1-201ENST00000437762 623 ntBASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 SPDYE14P-201ENST00000442619 822 ntBASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 MIR6080-201ENST00000617359 66 ntBASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC88AQ3V6T2 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 AC022494.1-201ENST00000466044 728 ntBASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 SLC25A6P2-201ENST00000497974 877 ntBASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 SERBP1P5-201ENST00000510079 1181 ntBASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 IGHV3-72-202ENST00000621503 303 ntBASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC88AQ3V6T2 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 MYCLP1-201ENST00000372451 1075 ntBASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 AC002056.1-201ENST00000395613 760 ntBASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 AC002558.1-201ENST00000488906 803 ntBASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 PPP6R2P1-201ENST00000450880 1275 ntBASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 IGHV3-42-201ENST00000520410 361 ntBASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 AL596325.1-201ENST00000563991 1082 ntBASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC88AQ3V6T2 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 ENSA-206ENST00000361631 725 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 RAC2-204ENST00000406508 893 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC88AQ3V6T2 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms