Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA1P55317 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA1P55317 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA1P55317 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA1P55317 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.84■□□□□ 0.29
FOXA1P55317 AC078925.2-201ENST00000624013 1973 ntBASIC16.84■□□□□ 0.29
FOXA1P55317 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA1P55317 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA1P55317 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA1P55317 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXA1P55317 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
FOXA1P55317 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.84■□□□□ 0.29
FOXA1P55317 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.84■□□□□ 0.29
FOXA1P55317 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.83■□□□□ 0.29
FOXA1P55317 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
FOXA1P55317 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
FOXA1P55317 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
FOXA1P55317 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA1P55317 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.83■□□□□ 0.28
FOXA1P55317 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA1P55317 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA1P55317 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.83■□□□□ 0.28
FOXA1P55317 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA1P55317 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.83■□□□□ 0.28
FOXA1P55317 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.83■□□□□ 0.28
FOXA1P55317 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA1P55317 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.83■□□□□ 0.28
FOXA1P55317 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.83■□□□□ 0.28
FOXA1P55317 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.28
FOXA1P55317 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.83■□□□□ 0.28
FOXA1P55317 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
FOXA1P55317 IGHV3-41-201ENST00000613121 348 ntBASIC16.83■□□□□ 0.28
FOXA1P55317 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.83■□□□□ 0.28
FOXA1P55317 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXA1P55317 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.83■□□□□ 0.28
FOXA1P55317 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA1P55317 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.82■□□□□ 0.28
FOXA1P55317 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA1P55317 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.82■□□□□ 0.28
FOXA1P55317 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA1P55317 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA1P55317 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA1P55317 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.82■□□□□ 0.28
FOXA1P55317 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.82■□□□□ 0.28
FOXA1P55317 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA1P55317 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA1P55317 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA1P55317 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA1P55317 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.82■□□□□ 0.28
FOXA1P55317 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.82■□□□□ 0.28
FOXA1P55317 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.82■□□□□ 0.28
FOXA1P55317 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.82■□□□□ 0.28
FOXA1P55317 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC16.82■□□□□ 0.28
FOXA1P55317 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA1P55317 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.82■□□□□ 0.28
FOXA1P55317 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.82■□□□□ 0.28
FOXA1P55317 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.82■□□□□ 0.28
FOXA1P55317 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.82■□□□□ 0.28
FOXA1P55317 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA1P55317 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA1P55317 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA1P55317 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA1P55317 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
FOXA1P55317 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.82■□□□□ 0.28
FOXA1P55317 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.82■□□□□ 0.28
FOXA1P55317 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA1P55317 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.82■□□□□ 0.28
FOXA1P55317 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA1P55317 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA1P55317 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
FOXA1P55317 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXA1P55317 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA1P55317 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA1P55317 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA1P55317 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA1P55317 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.81■□□□□ 0.28
FOXA1P55317 AC079328.2-201ENST00000561241 3354 ntBASIC16.81■□□□□ 0.28
FOXA1P55317 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA1P55317 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.81■□□□□ 0.28
FOXA1P55317 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA1P55317 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
FOXA1P55317 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.81■□□□□ 0.28
FOXA1P55317 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
FOXA1P55317 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.81■□□□□ 0.28
FOXA1P55317 AL136038.3-201ENST00000561909 1096 ntBASIC16.81■□□□□ 0.28
FOXA1P55317 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA1P55317 AC011840.4-201ENST00000578471 627 ntBASIC16.81■□□□□ 0.28
FOXA1P55317 AC090616.6-201ENST00000582640 721 ntBASIC16.81■□□□□ 0.28
FOXA1P55317 STK25P1-201ENST00000585406 838 ntBASIC16.81■□□□□ 0.28
FOXA1P55317 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
FOXA1P55317 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.81■□□□□ 0.28
FOXA1P55317 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.81■□□□□ 0.28
FOXA1P55317 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA1P55317 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.81■□□□□ 0.28
FOXA1P55317 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.81■□□□□ 0.28
FOXA1P55317 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
FOXA1P55317 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA1P55317 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
FOXA1P55317 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
FOXA1P55317 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms