Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC15.31■□□□□ 0.04
CX3CR1P49238 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC15.31■□□□□ 0.04
CX3CR1P49238 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CR1P49238 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CX3CR1P49238 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CR1P49238 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC15.31■□□□□ 0.04
CX3CR1P49238 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC15.31■□□□□ 0.04
CX3CR1P49238 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CR1P49238 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.31■□□□□ 0.04
CX3CR1P49238 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CR1P49238 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CX3CR1P49238 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CR1P49238 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CR1P49238 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CR1P49238 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.3■□□□□ 0.04
CX3CR1P49238 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CR1P49238 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CR1P49238 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CR1P49238 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC15.3■□□□□ 0.04
CX3CR1P49238 MYCLP1-201ENST00000372451 1075 ntBASIC15.3■□□□□ 0.04
CX3CR1P49238 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CR1P49238 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CX3CR1P49238 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CX3CR1P49238 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC15.3■□□□□ 0.04
CX3CR1P49238 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CR1P49238 AC125634.1-201ENST00000438758 1403 ntBASIC15.3■□□□□ 0.04
CX3CR1P49238 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CR1P49238 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC15.3■□□□□ 0.04
CX3CR1P49238 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CX3CR1P49238 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC15.3■□□□□ 0.04
CX3CR1P49238 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC15.3■□□□□ 0.04
CX3CR1P49238 AL049597.2-201ENST00000565575 961 ntBASIC15.3■□□□□ 0.04
CX3CR1P49238 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CR1P49238 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CR1P49238 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC15.3■□□□□ 0.04
CX3CR1P49238 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC15.3■□□□□ 0.04
CX3CR1P49238 AL121761.2-201ENST00000598007 1648 ntBASIC15.3■□□□□ 0.04
CX3CR1P49238 NKILA-202ENST00000614771 2598 ntBASIC15.3■□□□□ 0.04
CX3CR1P49238 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CR1P49238 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC15.3■□□□□ 0.04
CX3CR1P49238 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC15.3■□□□□ 0.04
CX3CR1P49238 AMT-250ENST00000637682 1823 ntTSL 5 BASIC15.3■□□□□ 0.04
CX3CR1P49238 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CR1P49238 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CX3CR1P49238 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CR1P49238 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CX3CR1P49238 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.3■□□□□ 0.04
CX3CR1P49238 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CR1P49238 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CR1P49238 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CX3CR1P49238 AC022211.2-201ENST00000585075 2527 ntBASIC15.3■□□□□ 0.04
CX3CR1P49238 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15.29■□□□□ 0.04
CX3CR1P49238 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CX3CR1P49238 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
CX3CR1P49238 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CX3CR1P49238 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC15.29■□□□□ 0.04
CX3CR1P49238 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC15.29■□□□□ 0.04
CX3CR1P49238 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CX3CR1P49238 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC15.29■□□□□ 0.04
CX3CR1P49238 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC15.29■□□□□ 0.04
CX3CR1P49238 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 CD320-202ENST00000537716 1119 ntTSL 2 BASIC15.29■□□□□ 0.04
CX3CR1P49238 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC15.29■□□□□ 0.04
CX3CR1P49238 AC109462.3-201ENST00000573934 613 ntBASIC15.29■□□□□ 0.04
CX3CR1P49238 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC15.29■□□□□ 0.04
CX3CR1P49238 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC15.29■□□□□ 0.04
CX3CR1P49238 AL121956.5-201ENST00000625261 221 ntBASIC15.29■□□□□ 0.04
CX3CR1P49238 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CX3CR1P49238 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC15.29■□□□□ 0.04
CX3CR1P49238 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CX3CR1P49238 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
CX3CR1P49238 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CX3CR1P49238 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CR1P49238 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC15.28■□□□□ 0.04
CX3CR1P49238 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CR1P49238 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC15.28■□□□□ 0.04
CX3CR1P49238 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CR1P49238 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CR1P49238 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC15.28■□□□□ 0.04
CX3CR1P49238 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CX3CR1P49238 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms