Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
XRCC1P18887 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
XRCC1P18887 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
XRCC1P18887 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
XRCC1P18887 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
XRCC1P18887 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
XRCC1P18887 OR6D1P-202ENST00000641007 5290 ntBASIC17.37■□□□□ 0.37
XRCC1P18887 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.37■□□□□ 0.37
XRCC1P18887 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
XRCC1P18887 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
XRCC1P18887 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
XRCC1P18887 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
XRCC1P18887 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
XRCC1P18887 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
XRCC1P18887 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.36■□□□□ 0.37
XRCC1P18887 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
XRCC1P18887 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.36■□□□□ 0.37
XRCC1P18887 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
XRCC1P18887 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
XRCC1P18887 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
XRCC1P18887 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
XRCC1P18887 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
XRCC1P18887 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
XRCC1P18887 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.36■□□□□ 0.37
XRCC1P18887 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
XRCC1P18887 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
XRCC1P18887 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
XRCC1P18887 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
XRCC1P18887 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
XRCC1P18887 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
XRCC1P18887 AC079781.3-201ENST00000449110 356 ntBASIC17.36■□□□□ 0.37
XRCC1P18887 FDX1P1-201ENST00000449115 551 ntBASIC17.36■□□□□ 0.37
XRCC1P18887 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.36■□□□□ 0.37
XRCC1P18887 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.36■□□□□ 0.37
XRCC1P18887 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.36■□□□□ 0.37
XRCC1P18887 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.36■□□□□ 0.37
XRCC1P18887 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.36■□□□□ 0.37
XRCC1P18887 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
XRCC1P18887 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
XRCC1P18887 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.36■□□□□ 0.37
XRCC1P18887 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.36■□□□□ 0.37
XRCC1P18887 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.36■□□□□ 0.37
XRCC1P18887 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.36■□□□□ 0.37
XRCC1P18887 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
XRCC1P18887 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
XRCC1P18887 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.36■□□□□ 0.37
XRCC1P18887 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
XRCC1P18887 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
XRCC1P18887 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
XRCC1P18887 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.36■□□□□ 0.37
XRCC1P18887 AL121761.2-201ENST00000598007 1648 ntBASIC17.36■□□□□ 0.37
XRCC1P18887 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
XRCC1P18887 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
XRCC1P18887 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
XRCC1P18887 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.35■□□□□ 0.37
XRCC1P18887 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
XRCC1P18887 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
XRCC1P18887 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
XRCC1P18887 AL139384.1-201ENST00000612143 3047 ntBASIC17.35■□□□□ 0.37
XRCC1P18887 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.35■□□□□ 0.37
XRCC1P18887 AL355312.1-201ENST00000407115 2176 ntBASIC17.35■□□□□ 0.37
XRCC1P18887 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
XRCC1P18887 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
XRCC1P18887 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
XRCC1P18887 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.35■□□□□ 0.37
XRCC1P18887 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.35■□□□□ 0.37
XRCC1P18887 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.35■□□□□ 0.37
XRCC1P18887 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.35■□□□□ 0.37
XRCC1P18887 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.35■□□□□ 0.37
XRCC1P18887 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.35■□□□□ 0.37
XRCC1P18887 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
XRCC1P18887 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.35■□□□□ 0.37
XRCC1P18887 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
XRCC1P18887 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.35■□□□□ 0.37
XRCC1P18887 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
XRCC1P18887 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.35■□□□□ 0.37
XRCC1P18887 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
XRCC1P18887 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
XRCC1P18887 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
XRCC1P18887 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.35■□□□□ 0.37
XRCC1P18887 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.35■□□□□ 0.37
XRCC1P18887 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
XRCC1P18887 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.35■□□□□ 0.37
XRCC1P18887 UBALD1-205ENST00000590891 2641 ntBASIC17.34■□□□□ 0.37
XRCC1P18887 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
XRCC1P18887 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
XRCC1P18887 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
XRCC1P18887 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
XRCC1P18887 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
XRCC1P18887 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
XRCC1P18887 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
XRCC1P18887 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.34■□□□□ 0.37
XRCC1P18887 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
XRCC1P18887 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
XRCC1P18887 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.34■□□□□ 0.37
XRCC1P18887 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
XRCC1P18887 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
XRCC1P18887 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
XRCC1P18887 AC007967.3-201ENST00000434308 558 ntBASIC17.34■□□□□ 0.37
XRCC1P18887 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms