Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A3P12111 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC17.89■□□□□ 0.45
COL6A3P12111 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC17.89■□□□□ 0.45
COL6A3P12111 AP3S2-216ENST00000617003 1561 ntBASIC17.89■□□□□ 0.45
COL6A3P12111 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A3P12111 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A3P12111 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A3P12111 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
COL6A3P12111 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A3P12111 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.88■□□□□ 0.45
COL6A3P12111 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC17.88■□□□□ 0.45
COL6A3P12111 AC099336.1-201ENST00000417053 1171 ntBASIC17.88■□□□□ 0.45
COL6A3P12111 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A3P12111 AC007551.1-201ENST00000457394 519 ntBASIC17.88■□□□□ 0.45
COL6A3P12111 AC015936.2-201ENST00000593177 259 ntBASIC17.88■□□□□ 0.45
COL6A3P12111 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A3P12111 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
COL6A3P12111 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A3P12111 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A3P12111 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.88■□□□□ 0.45
COL6A3P12111 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A3P12111 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A3P12111 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC17.88■□□□□ 0.45
COL6A3P12111 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
COL6A3P12111 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
COL6A3P12111 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A3P12111 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.88■□□□□ 0.45
COL6A3P12111 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A3P12111 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A3P12111 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
COL6A3P12111 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A3P12111 AC008267.7-201ENST00000624570 1194 ntBASIC17.87■□□□□ 0.45
COL6A3P12111 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
COL6A3P12111 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A3P12111 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A3P12111 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A3P12111 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.87■□□□□ 0.45
COL6A3P12111 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.87■□□□□ 0.45
COL6A3P12111 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A3P12111 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.87■□□□□ 0.45
COL6A3P12111 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A3P12111 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A3P12111 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A3P12111 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A3P12111 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A3P12111 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A3P12111 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.87■□□□□ 0.45
COL6A3P12111 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A3P12111 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A3P12111 MYCLP2-201ENST00000449268 967 ntBASIC17.87■□□□□ 0.45
COL6A3P12111 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.87■□□□□ 0.45
COL6A3P12111 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC17.87■□□□□ 0.45
COL6A3P12111 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC17.87■□□□□ 0.45
COL6A3P12111 AL118558.3-201ENST00000607414 1079 ntBASIC17.87■□□□□ 0.45
COL6A3P12111 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC17.87■□□□□ 0.45
COL6A3P12111 AC009336.1-201ENST00000608941 1553 ntBASIC17.86■□□□□ 0.45
COL6A3P12111 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.86■□□□□ 0.45
COL6A3P12111 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A3P12111 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.86■□□□□ 0.45
COL6A3P12111 CD81-207ENST00000481687 890 ntTSL 2 BASIC17.86■□□□□ 0.45
COL6A3P12111 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC17.86■□□□□ 0.45
COL6A3P12111 AP001889.1-201ENST00000525414 633 ntBASIC17.86■□□□□ 0.45
COL6A3P12111 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC17.86■□□□□ 0.45
COL6A3P12111 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
COL6A3P12111 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17.86■□□□□ 0.45
COL6A3P12111 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.86■□□□□ 0.45
COL6A3P12111 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A3P12111 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A3P12111 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A3P12111 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A3P12111 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A3P12111 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC17.86■□□□□ 0.45
COL6A3P12111 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC17.86■□□□□ 0.45
COL6A3P12111 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC17.86■□□□□ 0.45
COL6A3P12111 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A3P12111 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
COL6A3P12111 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A3P12111 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A3P12111 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC17.86■□□□□ 0.45
COL6A3P12111 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.85■□□□□ 0.45
COL6A3P12111 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.85■□□□□ 0.45
COL6A3P12111 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.85■□□□□ 0.45
COL6A3P12111 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A3P12111 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.85■□□□□ 0.45
COL6A3P12111 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.85■□□□□ 0.45
COL6A3P12111 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.85■□□□□ 0.45
COL6A3P12111 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.85■□□□□ 0.45
COL6A3P12111 RPL35-206ENST00000629845 340 ntTSL 5 BASIC17.85■□□□□ 0.45
COL6A3P12111 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.85■□□□□ 0.45
COL6A3P12111 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.85■□□□□ 0.45
COL6A3P12111 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.85■□□□□ 0.45
COL6A3P12111 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A3P12111 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A3P12111 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A3P12111 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.85■□□□□ 0.45
COL6A3P12111 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A3P12111 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A3P12111 ACTG1P17-201ENST00000558391 1119 ntBASIC17.85■□□□□ 0.45
COL6A3P12111 AC007431.3-201ENST00000623221 587 ntBASIC17.85■□□□□ 0.45
COL6A3P12111 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms