Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.79■□□□□ 0.6
CHRNA1P02708 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA1P02708 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA1P02708 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA1P02708 AC012317.2-201ENST00000623305 2251 ntBASIC18.79■□□□□ 0.6
CHRNA1P02708 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA1P02708 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
CHRNA1P02708 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CHRNA1P02708 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA1P02708 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA1P02708 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA1P02708 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC18.79■□□□□ 0.6
CHRNA1P02708 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA1P02708 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CHRNA1P02708 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC18.79■□□□□ 0.6
CHRNA1P02708 HLA-J-203ENST00000494367 1087 ntBASIC18.79■□□□□ 0.6
CHRNA1P02708 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA1P02708 AC112191.1-201ENST00000523689 701 ntBASIC18.79■□□□□ 0.6
CHRNA1P02708 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA1P02708 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA1P02708 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA1P02708 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.79■□□□□ 0.6
CHRNA1P02708 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
CHRNA1P02708 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA1P02708 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA1P02708 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
CHRNA1P02708 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.79■□□□□ 0.6
CHRNA1P02708 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA1P02708 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA1P02708 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA1P02708 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.79■□□□□ 0.6
CHRNA1P02708 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA1P02708 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.79■□□□□ 0.6
CHRNA1P02708 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA1P02708 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA1P02708 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA1P02708 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA1P02708 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA1P02708 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA1P02708 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA1P02708 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA1P02708 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA1P02708 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA1P02708 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CHRNA1P02708 CBR1-202ENST00000399191 838 ntTSL 3 BASIC18.78■□□□□ 0.6
CHRNA1P02708 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.78■□□□□ 0.6
CHRNA1P02708 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CHRNA1P02708 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CHRNA1P02708 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.78■□□□□ 0.6
CHRNA1P02708 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CHRNA1P02708 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA1P02708 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.78■□□□□ 0.6
CHRNA1P02708 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CHRNA1P02708 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CHRNA1P02708 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
CHRNA1P02708 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.78■□□□□ 0.6
CHRNA1P02708 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA1P02708 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA1P02708 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA1P02708 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA1P02708 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA1P02708 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.78■□□□□ 0.6
CHRNA1P02708 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CHRNA1P02708 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CHRNA1P02708 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC18.78■□□□□ 0.6
CHRNA1P02708 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CHRNA1P02708 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA1P02708 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA1P02708 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHRNA1P02708 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHRNA1P02708 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.77■□□□□ 0.6
CHRNA1P02708 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.77■□□□□ 0.6
CHRNA1P02708 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHRNA1P02708 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHRNA1P02708 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CHRNA1P02708 MIR770-201ENST00000390219 98 ntBASIC18.77■□□□□ 0.6
CHRNA1P02708 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHRNA1P02708 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CHRNA1P02708 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.77■□□□□ 0.6
CHRNA1P02708 AC109322.1-201ENST00000524499 1264 ntBASIC18.77■□□□□ 0.6
CHRNA1P02708 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.77■□□□□ 0.6
CHRNA1P02708 AC004449.1-201ENST00000564240 433 ntBASIC18.77■□□□□ 0.6
CHRNA1P02708 MIR3197-201ENST00000582241 73 ntBASIC18.77■□□□□ 0.6
CHRNA1P02708 AC099522.2-201ENST00000607001 744 ntBASIC18.77■□□□□ 0.6
CHRNA1P02708 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHRNA1P02708 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.77■□□□□ 0.6
CHRNA1P02708 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHRNA1P02708 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CHRNA1P02708 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
CHRNA1P02708 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.77■□□□□ 0.6
CHRNA1P02708 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.77■□□□□ 0.6
CHRNA1P02708 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
CHRNA1P02708 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CHRNA1P02708 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.77■□□□□ 0.59
CHRNA1P02708 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.77■□□□□ 0.59
CHRNA1P02708 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
CHRNA1P02708 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.77■□□□□ 0.59
CHRNA1P02708 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.76■□□□□ 0.59
CHRNA1P02708 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CHRNA1P02708 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms