Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 KRT8P10-201ENST00000450021 1447 ntBASIC16.69■□□□□ 0.26
SEMA3DO95025 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
SEMA3DO95025 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SEMA3DO95025 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.69■□□□□ 0.26
SEMA3DO95025 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.68■□□□□ 0.26
SEMA3DO95025 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.68■□□□□ 0.26
SEMA3DO95025 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
SEMA3DO95025 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
SEMA3DO95025 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
SEMA3DO95025 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.68■□□□□ 0.26
SEMA3DO95025 POM121L3P-201ENST00000419331 1163 ntBASIC16.68■□□□□ 0.26
SEMA3DO95025 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
SEMA3DO95025 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.68■□□□□ 0.26
SEMA3DO95025 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.68■□□□□ 0.26
SEMA3DO95025 AC104819.1-201ENST00000504587 486 ntBASIC16.68■□□□□ 0.26
SEMA3DO95025 AC096582.2-201ENST00000510860 516 ntBASIC16.68■□□□□ 0.26
SEMA3DO95025 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.68■□□□□ 0.26
SEMA3DO95025 AC074051.2-201ENST00000565115 352 ntBASIC16.68■□□□□ 0.26
SEMA3DO95025 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.68■□□□□ 0.26
SEMA3DO95025 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
SEMA3DO95025 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
SEMA3DO95025 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
SEMA3DO95025 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.68■□□□□ 0.26
SEMA3DO95025 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 AC116353.5-201ENST00000638148 1699 ntBASIC16.68■□□□□ 0.26
SEMA3DO95025 INTS4P1-201ENST00000438455 1935 ntBASIC16.68■□□□□ 0.26
SEMA3DO95025 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
SEMA3DO95025 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.68■□□□□ 0.26
SEMA3DO95025 AC046185.3-201ENST00000623228 1824 ntBASIC16.68■□□□□ 0.26
SEMA3DO95025 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SEMA3DO95025 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SEMA3DO95025 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SEMA3DO95025 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.67■□□□□ 0.26
SEMA3DO95025 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.67■□□□□ 0.26
SEMA3DO95025 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
SEMA3DO95025 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
SEMA3DO95025 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.67■□□□□ 0.26
SEMA3DO95025 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SEMA3DO95025 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SEMA3DO95025 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.67■□□□□ 0.26
SEMA3DO95025 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SEMA3DO95025 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SEMA3DO95025 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SEMA3DO95025 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.67■□□□□ 0.26
SEMA3DO95025 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SEMA3DO95025 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.67■□□□□ 0.26
SEMA3DO95025 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SEMA3DO95025 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SEMA3DO95025 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.67■□□□□ 0.26
SEMA3DO95025 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
SEMA3DO95025 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SEMA3DO95025 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
SEMA3DO95025 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.67■□□□□ 0.26
SEMA3DO95025 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.67■□□□□ 0.26
SEMA3DO95025 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.67■□□□□ 0.26
SEMA3DO95025 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.67■□□□□ 0.26
SEMA3DO95025 AD001527.2-201ENST00000622994 785 ntBASIC16.67■□□□□ 0.26
SEMA3DO95025 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.67■□□□□ 0.26
SEMA3DO95025 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SEMA3DO95025 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SEMA3DO95025 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SEMA3DO95025 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SEMA3DO95025 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SEMA3DO95025 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SEMA3DO95025 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.67■□□□□ 0.26
SEMA3DO95025 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
SEMA3DO95025 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SEMA3DO95025 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
SEMA3DO95025 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SEMA3DO95025 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
SEMA3DO95025 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.67■□□□□ 0.26
SEMA3DO95025 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SEMA3DO95025 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SEMA3DO95025 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SEMA3DO95025 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SEMA3DO95025 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms