Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB3O75112 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB3O75112 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.37■□□□□ 0.21
LDB3O75112 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.37■□□□□ 0.21
LDB3O75112 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB3O75112 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.37■□□□□ 0.21
LDB3O75112 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB3O75112 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB3O75112 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LDB3O75112 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.37■□□□□ 0.21
LDB3O75112 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB3O75112 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB3O75112 AC079781.3-201ENST00000449110 356 ntBASIC16.37■□□□□ 0.21
LDB3O75112 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.37■□□□□ 0.21
LDB3O75112 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB3O75112 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
LDB3O75112 SART3-203ENST00000546611 1184 ntBASIC16.37■□□□□ 0.21
LDB3O75112 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
LDB3O75112 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.37■□□□□ 0.21
LDB3O75112 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.37■□□□□ 0.21
LDB3O75112 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
LDB3O75112 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
LDB3O75112 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LDB3O75112 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.37■□□□□ 0.21
LDB3O75112 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LDB3O75112 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LDB3O75112 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
LDB3O75112 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.36■□□□□ 0.21
LDB3O75112 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.36■□□□□ 0.21
LDB3O75112 SIGLEC16-201ENST00000599858 1437 ntBASIC16.36■□□□□ 0.21
LDB3O75112 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
LDB3O75112 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDB3O75112 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.36■□□□□ 0.21
LDB3O75112 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
LDB3O75112 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
LDB3O75112 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.36■□□□□ 0.21
LDB3O75112 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDB3O75112 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.36■□□□□ 0.21
LDB3O75112 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LDB3O75112 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.36■□□□□ 0.21
LDB3O75112 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
LDB3O75112 SIGLEC30P-201ENST00000455569 941 ntBASIC16.36■□□□□ 0.21
LDB3O75112 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.36■□□□□ 0.21
LDB3O75112 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.36■□□□□ 0.21
LDB3O75112 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.36■□□□□ 0.21
LDB3O75112 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.36■□□□□ 0.21
LDB3O75112 AC073592.4-201ENST00000623827 446 ntBASIC16.36■□□□□ 0.21
LDB3O75112 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDB3O75112 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
LDB3O75112 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDB3O75112 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDB3O75112 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDB3O75112 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDB3O75112 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
LDB3O75112 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.36■□□□□ 0.21
LDB3O75112 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
LDB3O75112 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDB3O75112 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.36■□□□□ 0.21
LDB3O75112 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDB3O75112 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
LDB3O75112 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LDB3O75112 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDB3O75112 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.36■□□□□ 0.21
LDB3O75112 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LDB3O75112 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
LDB3O75112 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
LDB3O75112 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
LDB3O75112 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDB3O75112 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.35■□□□□ 0.21
LDB3O75112 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.35■□□□□ 0.21
LDB3O75112 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDB3O75112 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LDB3O75112 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
LDB3O75112 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDB3O75112 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
LDB3O75112 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDB3O75112 AL645608.8-201ENST00000606034 2086 ntBASIC16.35■□□□□ 0.21
LDB3O75112 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDB3O75112 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.35■□□□□ 0.21
LDB3O75112 AL135999.2-201ENST00000622438 1686 ntBASIC16.35■□□□□ 0.21
LDB3O75112 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LDB3O75112 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDB3O75112 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.35■□□□□ 0.21
LDB3O75112 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDB3O75112 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
LDB3O75112 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.35■□□□□ 0.21
LDB3O75112 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.35■□□□□ 0.21
LDB3O75112 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.35■□□□□ 0.21
LDB3O75112 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.35■□□□□ 0.21
LDB3O75112 AL121912.1-201ENST00000603683 238 ntBASIC16.35■□□□□ 0.21
LDB3O75112 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.35■□□□□ 0.21
LDB3O75112 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.35■□□□□ 0.21
LDB3O75112 AL031008.1-201ENST00000619963 541 ntBASIC16.35■□□□□ 0.21
LDB3O75112 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
LDB3O75112 AL139288.1-201ENST00000623748 933 ntBASIC16.35■□□□□ 0.21
LDB3O75112 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.35■□□□□ 0.21
LDB3O75112 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.35■□□□□ 0.21
LDB3O75112 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.35■□□□□ 0.21
LDB3O75112 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDB3O75112 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms