Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 AC116407.3-201ENST00000623905 1129 ntBASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 NCF1C-201ENST00000438382 1427 ntBASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 AL135999.2-201ENST00000622438 1686 ntBASIC18.63■□□□□ 0.57
SNX9Q9Y5X1 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 AL590627.1-203ENST00000421194 1026 ntBASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 AC092910.1-201ENST00000482027 1129 ntBASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 AC105339.3-201ENST00000560043 636 ntBASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SNX9Q9Y5X1 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 AP002414.3-201ENST00000589352 1468 ntBASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 AC006557.2-201ENST00000592985 1240 ntBASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 AC120114.3-201ENST00000611923 658 ntBASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.61■□□□□ 0.57
SNX9Q9Y5X1 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SNX9Q9Y5X1 IL9RP2-201ENST00000423948 1312 ntBASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms