Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AC025580.3-201ENST00000617932 1424 ntBASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 AC211486.1-202ENST00000416371 468 ntBASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 SLC25A6P5-201ENST00000435663 894 ntBASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 SLC25A6P2-201ENST00000497974 877 ntBASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 AC211476.1-201ENST00000503899 468 ntBASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 YBX1P5-201ENST00000509441 847 ntBASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 PDPK2P-202ENST00000562415 1191 ntBASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 MIR4469-201ENST00000583919 79 ntBASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 AC018470.1-201ENST00000624790 3129 ntBASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
PAAF1Q9BRP4 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 AC133963.1-201ENST00000504166 1679 ntBASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PAAF1Q9BRP4 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 CD82-202ENST00000342935 967 ntTSL 5 BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 HTR5BP-201ENST00000430851 1154 ntBASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 AL596442.2-201ENST00000610240 980 ntBASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 C20orf181-201ENST00000623918 480 ntBASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
PAAF1Q9BRP4 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
PAAF1Q9BRP4 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
PAAF1Q9BRP4 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PAAF1Q9BRP4 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms