Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHFRQ96EP1 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CHFRQ96EP1 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHFRQ96EP1 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.64■□□□□ 0.41
CHFRQ96EP1 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
CHFRQ96EP1 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHFRQ96EP1 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.64■□□□□ 0.41
CHFRQ96EP1 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHFRQ96EP1 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHFRQ96EP1 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 AC046185.3-201ENST00000623228 1824 ntBASIC17.63■□□□□ 0.41
CHFRQ96EP1 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHFRQ96EP1 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHFRQ96EP1 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHFRQ96EP1 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHFRQ96EP1 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHFRQ96EP1 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHFRQ96EP1 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 TSEN15P1-201ENST00000423257 515 ntBASIC17.63■□□□□ 0.41
CHFRQ96EP1 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHFRQ96EP1 AC068137.2-201ENST00000605408 478 ntBASIC17.63■□□□□ 0.41
CHFRQ96EP1 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHFRQ96EP1 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHFRQ96EP1 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHFRQ96EP1 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHFRQ96EP1 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CHFRQ96EP1 NEFHP1-201ENST00000412845 2629 ntBASIC17.63■□□□□ 0.41
CHFRQ96EP1 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHFRQ96EP1 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
CHFRQ96EP1 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.63■□□□□ 0.41
CHFRQ96EP1 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CHFRQ96EP1 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHFRQ96EP1 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHFRQ96EP1 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHFRQ96EP1 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CHFRQ96EP1 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CHFRQ96EP1 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHFRQ96EP1 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CHFRQ96EP1 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.62■□□□□ 0.41
CHFRQ96EP1 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHFRQ96EP1 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CHFRQ96EP1 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHFRQ96EP1 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.62■□□□□ 0.41
CHFRQ96EP1 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CHFRQ96EP1 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.62■□□□□ 0.41
CHFRQ96EP1 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.62■□□□□ 0.41
CHFRQ96EP1 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.62■□□□□ 0.41
CHFRQ96EP1 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CHFRQ96EP1 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CHFRQ96EP1 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.62■□□□□ 0.41
CHFRQ96EP1 MIR3197-201ENST00000582241 73 ntBASIC17.62■□□□□ 0.41
CHFRQ96EP1 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHFRQ96EP1 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.62■□□□□ 0.41
CHFRQ96EP1 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHFRQ96EP1 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.62■□□□□ 0.41
CHFRQ96EP1 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHFRQ96EP1 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CHFRQ96EP1 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.62■□□□□ 0.41
CHFRQ96EP1 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.62■□□□□ 0.41
CHFRQ96EP1 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CHFRQ96EP1 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHFRQ96EP1 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.62■□□□□ 0.41
CHFRQ96EP1 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHFRQ96EP1 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CHFRQ96EP1 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CHFRQ96EP1 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
CHFRQ96EP1 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHFRQ96EP1 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHFRQ96EP1 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
CHFRQ96EP1 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CHFRQ96EP1 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.61■□□□□ 0.41
CHFRQ96EP1 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.61■□□□□ 0.41
CHFRQ96EP1 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.61■□□□□ 0.41
CHFRQ96EP1 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.61■□□□□ 0.41
CHFRQ96EP1 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.61■□□□□ 0.41
CHFRQ96EP1 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.61■□□□□ 0.41
CHFRQ96EP1 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.61■□□□□ 0.41
CHFRQ96EP1 AC022145.2-201ENST00000598203 171 ntBASIC17.61■□□□□ 0.41
CHFRQ96EP1 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CHFRQ96EP1 LETM1P2-201ENST00000597330 2178 ntBASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms