Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 AL024508.2-201ENST00000607749 1894 ntBASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 AC022898.2-201ENST00000616822 1312 ntBASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
ZNF540Q8NDQ6 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 GXYLT1P6-201ENST00000456472 1187 ntBASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 MIR3180-5-201ENST00000583743 153 ntBASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 AC132938.6-201ENST00000623828 1655 ntBASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.17■□□□□ 0.18
ZNF540Q8NDQ6 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 NTF6B-201ENST00000591913 560 ntBASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.16■□□□□ 0.18
ZNF540Q8NDQ6 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 AC079328.2-201ENST00000561241 3354 ntBASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.15■□□□□ 0.18
ZNF540Q8NDQ6 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms