Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 BASP1P1-201ENST00000430708 665 ntBASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 AC140658.5-201ENST00000438532 169 ntBASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 SLC25A6P2-201ENST00000497974 877 ntBASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 PUDP-206ENST00000540122 825 ntTSL 2 BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 AL512356.2-201ENST00000546955 174 ntBASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 AC004408.2-201ENST00000623613 2777 ntBASIC17.73■□□□□ 0.43
SLC44A3Q8N4M1 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 AC236430.1-201ENST00000402231 743 ntBASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 AC079140.1-201ENST00000508039 487 ntBASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 TUBB3P1-201ENST00000405796 1332 ntBASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.72■□□□□ 0.43
SLC44A3Q8N4M1 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 MIR943-201ENST00000401286 94 ntBASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 FAM58DP-201ENST00000428076 619 ntBASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 AC002472.2-201ENST00000442739 958 ntBASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 TSPY16P-201ENST00000449843 468 ntBASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 AC243562.1-201ENST00000560672 389 ntBASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.71■□□□□ 0.43
SLC44A3Q8N4M1 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.42
SLC44A3Q8N4M1 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms