Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 NKAPP1-205ENST00000585790 367 ntBASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 AC027601.4-201ENST00000611259 610 ntBASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 AL139288.1-201ENST00000623748 933 ntBASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC144BQ3MJ40 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 AC034105.1-201ENST00000563488 319 ntBASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 AC140113.2-201ENST00000604370 208 ntBASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC144BQ3MJ40 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
CCDC144BQ3MJ40 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 MTDHP4-201ENST00000600287 670 ntBASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 AC008735.5-201ENST00000623544 497 ntBASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CCDC144BQ3MJ40 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC144BQ3MJ40 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CCDC144BQ3MJ40 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC144BQ3MJ40 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC144BQ3MJ40 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC144BQ3MJ40 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC144BQ3MJ40 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC144BQ3MJ40 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CCDC144BQ3MJ40 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CCDC144BQ3MJ40 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CCDC144BQ3MJ40 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CCDC144BQ3MJ40 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.19■□□□□ 0.82
CCDC144BQ3MJ40 LBH-204ENST00000406087 559 ntTSL 4 BASIC20.19■□□□□ 0.82
CCDC144BQ3MJ40 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC144BQ3MJ40 MED15P5-201ENST00000423150 992 ntBASIC20.19■□□□□ 0.82
CCDC144BQ3MJ40 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC20.19■□□□□ 0.82
CCDC144BQ3MJ40 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC20.19■□□□□ 0.82
CCDC144BQ3MJ40 AC092183.1-201ENST00000469884 875 ntBASIC20.19■□□□□ 0.82
CCDC144BQ3MJ40 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC20.19■□□□□ 0.82
CCDC144BQ3MJ40 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms