Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MKNK2P1-201ENST00000437526 628 ntBASIC18.47■□□□□ 0.55
USP41Q3LFD5 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.47■□□□□ 0.55
USP41Q3LFD5 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.47■□□□□ 0.55
USP41Q3LFD5 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.47■□□□□ 0.55
USP41Q3LFD5 OR7E47P-204ENST00000575924 449 ntBASIC18.47■□□□□ 0.55
USP41Q3LFD5 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC18.47■□□□□ 0.55
USP41Q3LFD5 AC004877.2-201ENST00000623941 599 ntBASIC18.47■□□□□ 0.55
USP41Q3LFD5 AC010507.1-201ENST00000633895 436 ntBASIC18.47■□□□□ 0.55
USP41Q3LFD5 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
USP41Q3LFD5 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USP41Q3LFD5 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
USP41Q3LFD5 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
USP41Q3LFD5 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.47■□□□□ 0.55
USP41Q3LFD5 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USP41Q3LFD5 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
USP41Q3LFD5 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USP41Q3LFD5 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.46■□□□□ 0.55
USP41Q3LFD5 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.46■□□□□ 0.55
USP41Q3LFD5 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.46■□□□□ 0.55
USP41Q3LFD5 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.46■□□□□ 0.55
USP41Q3LFD5 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.46■□□□□ 0.55
USP41Q3LFD5 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.46■□□□□ 0.55
USP41Q3LFD5 PDPK2P-202ENST00000562415 1191 ntBASIC18.46■□□□□ 0.55
USP41Q3LFD5 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
USP41Q3LFD5 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.46■□□□□ 0.55
USP41Q3LFD5 AL596442.2-201ENST00000610240 980 ntBASIC18.46■□□□□ 0.55
USP41Q3LFD5 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.46■□□□□ 0.55
USP41Q3LFD5 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC18.46■□□□□ 0.55
USP41Q3LFD5 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 BCAR1-209ENST00000546196 1340 ntBASIC18.46■□□□□ 0.55
USP41Q3LFD5 AL590787.1-201ENST00000568856 1315 ntBASIC18.46■□□□□ 0.55
USP41Q3LFD5 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.46■□□□□ 0.55
USP41Q3LFD5 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP41Q3LFD5 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.46■□□□□ 0.55
USP41Q3LFD5 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
USP41Q3LFD5 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.54
USP41Q3LFD5 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.46■□□□□ 0.54
USP41Q3LFD5 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
USP41Q3LFD5 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
USP41Q3LFD5 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP41Q3LFD5 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.45■□□□□ 0.54
USP41Q3LFD5 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP41Q3LFD5 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP41Q3LFD5 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP41Q3LFD5 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP41Q3LFD5 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
USP41Q3LFD5 AC046185.3-201ENST00000623228 1824 ntBASIC18.45■□□□□ 0.54
USP41Q3LFD5 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP41Q3LFD5 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP41Q3LFD5 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP41Q3LFD5 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP41Q3LFD5 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
USP41Q3LFD5 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP41Q3LFD5 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.45■□□□□ 0.54
USP41Q3LFD5 RHOQP3-201ENST00000437982 621 ntBASIC18.45■□□□□ 0.54
USP41Q3LFD5 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC18.45■□□□□ 0.54
USP41Q3LFD5 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.45■□□□□ 0.54
USP41Q3LFD5 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.45■□□□□ 0.54
USP41Q3LFD5 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.45■□□□□ 0.54
USP41Q3LFD5 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
USP41Q3LFD5 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP41Q3LFD5 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP41Q3LFD5 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP41Q3LFD5 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.45■□□□□ 0.54
USP41Q3LFD5 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP41Q3LFD5 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.45■□□□□ 0.54
USP41Q3LFD5 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
USP41Q3LFD5 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.45■□□□□ 0.54
USP41Q3LFD5 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USP41Q3LFD5 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.44■□□□□ 0.54
USP41Q3LFD5 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.44■□□□□ 0.54
USP41Q3LFD5 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
USP41Q3LFD5 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.44■□□□□ 0.54
USP41Q3LFD5 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP41Q3LFD5 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
USP41Q3LFD5 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.44■□□□□ 0.54
USP41Q3LFD5 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP41Q3LFD5 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP41Q3LFD5 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.44■□□□□ 0.54
USP41Q3LFD5 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 12.4 ms