Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
LIM2P55344 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIM2P55344 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIM2P55344 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LIM2P55344 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIM2P55344 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIM2P55344 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIM2P55344 KLF4P1-201ENST00000412782 1185 ntBASIC16.53■□□□□ 0.24
LIM2P55344 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LIM2P55344 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.53■□□□□ 0.24
LIM2P55344 STK19B-204ENST00000512515 211 ntBASIC16.53■□□□□ 0.24
LIM2P55344 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.53■□□□□ 0.24
LIM2P55344 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
LIM2P55344 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.53■□□□□ 0.24
LIM2P55344 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.53■□□□□ 0.24
LIM2P55344 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.53■□□□□ 0.24
LIM2P55344 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.53■□□□□ 0.24
LIM2P55344 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LIM2P55344 REXO1L6P-202ENST00000619970 1078 ntBASIC16.53■□□□□ 0.24
LIM2P55344 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.53■□□□□ 0.24
LIM2P55344 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.53■□□□□ 0.24
LIM2P55344 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LIM2P55344 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIM2P55344 AD000864.1-201ENST00000624076 2295 ntBASIC16.53■□□□□ 0.24
LIM2P55344 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
LIM2P55344 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.53■□□□□ 0.24
LIM2P55344 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.24
LIM2P55344 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIM2P55344 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.52■□□□□ 0.24
LIM2P55344 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LIM2P55344 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIM2P55344 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.52■□□□□ 0.24
LIM2P55344 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIM2P55344 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.52■□□□□ 0.24
LIM2P55344 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LIM2P55344 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
LIM2P55344 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.52■□□□□ 0.24
LIM2P55344 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIM2P55344 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIM2P55344 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIM2P55344 AKR1C7P-201ENST00000305623 895 ntBASIC16.52■□□□□ 0.24
LIM2P55344 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.24
LIM2P55344 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIM2P55344 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIM2P55344 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LIM2P55344 RBM17P3-201ENST00000417687 1192 ntBASIC16.52■□□□□ 0.24
LIM2P55344 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.52■□□□□ 0.24
LIM2P55344 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.52■□□□□ 0.24
LIM2P55344 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
LIM2P55344 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LIM2P55344 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.52■□□□□ 0.24
LIM2P55344 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LIM2P55344 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.52■□□□□ 0.24
LIM2P55344 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.52■□□□□ 0.24
LIM2P55344 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.52■□□□□ 0.24
LIM2P55344 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
LIM2P55344 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
LIM2P55344 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
LIM2P55344 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LIM2P55344 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LIM2P55344 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
LIM2P55344 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.52■□□□□ 0.23
LIM2P55344 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
LIM2P55344 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.52■□□□□ 0.23
LIM2P55344 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
LIM2P55344 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
LIM2P55344 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.52■□□□□ 0.23
LIM2P55344 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.52■□□□□ 0.23
LIM2P55344 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.52■□□□□ 0.23
LIM2P55344 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
LIM2P55344 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
LIM2P55344 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIM2P55344 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.51■□□□□ 0.23
LIM2P55344 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIM2P55344 AC009336.1-201ENST00000608941 1553 ntBASIC16.51■□□□□ 0.23
LIM2P55344 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.51■□□□□ 0.23
LIM2P55344 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.51■□□□□ 0.23
LIM2P55344 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIM2P55344 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIM2P55344 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.51■□□□□ 0.23
LIM2P55344 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIM2P55344 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIM2P55344 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LIM2P55344 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.51■□□□□ 0.23
LIM2P55344 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIM2P55344 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIM2P55344 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.51■□□□□ 0.23
LIM2P55344 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.51■□□□□ 0.23
LIM2P55344 AL450487.1-201ENST00000426799 995 ntBASIC16.51■□□□□ 0.23
LIM2P55344 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.51■□□□□ 0.23
LIM2P55344 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.51■□□□□ 0.23
LIM2P55344 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIM2P55344 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIM2P55344 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIM2P55344 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.51■□□□□ 0.23
LIM2P55344 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
LIM2P55344 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.51■□□□□ 0.23
LIM2P55344 AC046185.3-201ENST00000623228 1824 ntBASIC16.51■□□□□ 0.23
LIM2P55344 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIM2P55344 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms