Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.66■□□□□ 0.26
MSX2P35548 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
MSX2P35548 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.66■□□□□ 0.26
MSX2P35548 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSX2P35548 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSX2P35548 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSX2P35548 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MSX2P35548 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
MSX2P35548 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
MSX2P35548 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.66■□□□□ 0.26
MSX2P35548 LINC01311-201ENST00000565162 1445 ntBASIC16.66■□□□□ 0.26
MSX2P35548 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC16.66■□□□□ 0.26
MSX2P35548 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.66■□□□□ 0.26
MSX2P35548 AL359736.2-201ENST00000621992 437 ntBASIC16.66■□□□□ 0.26
MSX2P35548 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC16.66■□□□□ 0.26
MSX2P35548 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSX2P35548 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSX2P35548 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
MSX2P35548 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSX2P35548 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MSX2P35548 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.66■□□□□ 0.26
MSX2P35548 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.66■□□□□ 0.26
MSX2P35548 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
MSX2P35548 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.65■□□□□ 0.26
MSX2P35548 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 AC092338.2-201ENST00000568827 1415 ntBASIC16.65■□□□□ 0.26
MSX2P35548 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC16.65■□□□□ 0.26
MSX2P35548 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC16.65■□□□□ 0.26
MSX2P35548 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC16.65■□□□□ 0.26
MSX2P35548 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.65■□□□□ 0.26
MSX2P35548 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
MSX2P35548 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
MSX2P35548 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSX2P35548 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
MSX2P35548 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.64■□□□□ 0.25
MSX2P35548 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSX2P35548 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSX2P35548 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSX2P35548 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.64■□□□□ 0.25
MSX2P35548 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.64■□□□□ 0.25
MSX2P35548 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
MSX2P35548 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
MSX2P35548 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.64■□□□□ 0.25
MSX2P35548 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
MSX2P35548 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSX2P35548 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.64■□□□□ 0.25
MSX2P35548 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSX2P35548 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSX2P35548 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.64■□□□□ 0.25
MSX2P35548 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSX2P35548 SLC25A1P3-201ENST00000395415 828 ntBASIC16.64■□□□□ 0.25
MSX2P35548 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSX2P35548 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.64■□□□□ 0.25
MSX2P35548 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSX2P35548 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
MSX2P35548 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSX2P35548 SLC25A1P2-201ENST00000430693 912 ntBASIC16.64■□□□□ 0.25
MSX2P35548 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSX2P35548 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSX2P35548 AL355355.2-201ENST00000442321 338 ntBASIC16.64■□□□□ 0.25
MSX2P35548 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSX2P35548 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSX2P35548 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC16.64■□□□□ 0.25
MSX2P35548 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC16.64■□□□□ 0.25
MSX2P35548 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSX2P35548 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.64■□□□□ 0.25
MSX2P35548 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.64■□□□□ 0.25
MSX2P35548 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC16.64■□□□□ 0.25
MSX2P35548 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.64■□□□□ 0.25
MSX2P35548 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC16.64■□□□□ 0.25
MSX2P35548 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
MSX2P35548 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
MSX2P35548 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.64■□□□□ 0.25
MSX2P35548 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSX2P35548 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.64■□□□□ 0.25
MSX2P35548 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSX2P35548 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSX2P35548 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSX2P35548 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
MSX2P35548 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms