Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 AC005593.1-201ENST00000624894 515 ntBASIC14.78□□□□□ -0.04
USF1P22415 PGM5P2-202ENST00000637225 1043 ntBASIC14.78□□□□□ -0.04
USF1P22415 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC14.78□□□□□ -0.04
USF1P22415 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC14.78□□□□□ -0.04
USF1P22415 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
USF1P22415 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC14.78□□□□□ -0.04
USF1P22415 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
USF1P22415 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
USF1P22415 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC14.78□□□□□ -0.04
USF1P22415 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
USF1P22415 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC14.78□□□□□ -0.04
USF1P22415 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC14.78□□□□□ -0.04
USF1P22415 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC14.78□□□□□ -0.04
USF1P22415 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
USF1P22415 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
USF1P22415 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
USF1P22415 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
USF1P22415 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
USF1P22415 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
USF1P22415 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
USF1P22415 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
USF1P22415 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
USF1P22415 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
USF1P22415 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.04
USF1P22415 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
USF1P22415 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC14.77□□□□□ -0.04
USF1P22415 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC14.77□□□□□ -0.04
USF1P22415 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
USF1P22415 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
USF1P22415 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC14.77□□□□□ -0.05
USF1P22415 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
USF1P22415 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
USF1P22415 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC14.77□□□□□ -0.05
USF1P22415 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC14.77□□□□□ -0.05
USF1P22415 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC14.77□□□□□ -0.05
USF1P22415 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
USF1P22415 AC079781.4-201ENST00000641908 219 ntBASIC14.77□□□□□ -0.05
USF1P22415 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
USF1P22415 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
USF1P22415 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC14.77□□□□□ -0.05
USF1P22415 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
USF1P22415 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
USF1P22415 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
USF1P22415 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
USF1P22415 AC132938.6-201ENST00000623828 1655 ntBASIC14.77□□□□□ -0.05
USF1P22415 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
USF1P22415 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
USF1P22415 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC14.77□□□□□ -0.05
USF1P22415 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC14.77□□□□□ -0.05
USF1P22415 PMPCAP1-201ENST00000508114 1576 ntBASIC14.77□□□□□ -0.05
USF1P22415 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC14.77□□□□□ -0.05
USF1P22415 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
USF1P22415 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
USF1P22415 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
USF1P22415 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
USF1P22415 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
USF1P22415 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC14.76□□□□□ -0.05
USF1P22415 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
USF1P22415 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
USF1P22415 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
USF1P22415 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
USF1P22415 POR-209ENST00000439269 1858 ntTSL 2 BASIC14.76□□□□□ -0.05
USF1P22415 GATB-213ENST00000515812 1893 ntTSL 5 BASIC14.76□□□□□ -0.05
USF1P22415 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
USF1P22415 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC14.76□□□□□ -0.05
USF1P22415 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
USF1P22415 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
USF1P22415 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
USF1P22415 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
USF1P22415 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
USF1P22415 AC022898.2-201ENST00000616822 1312 ntBASIC14.76□□□□□ -0.05
USF1P22415 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
USF1P22415 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
USF1P22415 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
USF1P22415 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
USF1P22415 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC14.76□□□□□ -0.05
USF1P22415 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC14.76□□□□□ -0.05
USF1P22415 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
USF1P22415 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
USF1P22415 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC14.76□□□□□ -0.05
USF1P22415 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
USF1P22415 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC14.76□□□□□ -0.05
USF1P22415 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC14.76□□□□□ -0.05
USF1P22415 SLC4A1APP2-201ENST00000424054 1259 ntBASIC14.76□□□□□ -0.05
USF1P22415 AC103564.2-201ENST00000432853 1299 ntBASIC14.76□□□□□ -0.05
USF1P22415 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
USF1P22415 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
USF1P22415 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
USF1P22415 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC14.76□□□□□ -0.05
USF1P22415 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC14.76□□□□□ -0.05
USF1P22415 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms