Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
MSH3P20585 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.35■□□□□ 0.37
MSH3P20585 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
MSH3P20585 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
MSH3P20585 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.34■□□□□ 0.37
MSH3P20585 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.34■□□□□ 0.37
MSH3P20585 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.34■□□□□ 0.37
MSH3P20585 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.34■□□□□ 0.37
MSH3P20585 SAPCD2P3-201ENST00000455031 850 ntBASIC17.34■□□□□ 0.37
MSH3P20585 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
MSH3P20585 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 UNC93B7-201ENST00000509439 705 ntBASIC17.34■□□□□ 0.37
MSH3P20585 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
MSH3P20585 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.34■□□□□ 0.37
MSH3P20585 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.34■□□□□ 0.37
MSH3P20585 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
MSH3P20585 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.34■□□□□ 0.37
MSH3P20585 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.34■□□□□ 0.37
MSH3P20585 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.34■□□□□ 0.37
MSH3P20585 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.34■□□□□ 0.37
MSH3P20585 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.34■□□□□ 0.37
MSH3P20585 REXO1L6P-202ENST00000619970 1078 ntBASIC17.34■□□□□ 0.37
MSH3P20585 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.34■□□□□ 0.37
MSH3P20585 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.34■□□□□ 0.37
MSH3P20585 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
MSH3P20585 AP000867.4-201ENST00000641616 219 ntBASIC17.34■□□□□ 0.37
MSH3P20585 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.34■□□□□ 0.37
MSH3P20585 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.34■□□□□ 0.37
MSH3P20585 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSH3P20585 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
MSH3P20585 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
MSH3P20585 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.33■□□□□ 0.37
MSH3P20585 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
MSH3P20585 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.33■□□□□ 0.37
MSH3P20585 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
MSH3P20585 AL645608.8-201ENST00000606034 2086 ntBASIC17.33■□□□□ 0.37
MSH3P20585 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.33■□□□□ 0.37
MSH3P20585 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
MSH3P20585 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
MSH3P20585 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
MSH3P20585 OR6D1P-203ENST00000641209 4860 ntBASIC17.33■□□□□ 0.37
MSH3P20585 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
MSH3P20585 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
MSH3P20585 PMPCAP1-201ENST00000508114 1576 ntBASIC17.33■□□□□ 0.37
MSH3P20585 AL138688.1-201ENST00000624851 1594 ntBASIC17.33■□□□□ 0.37
MSH3P20585 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.33■□□□□ 0.37
MSH3P20585 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.33■□□□□ 0.37
MSH3P20585 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
MSH3P20585 AP005117.1-201ENST00000584346 1413 ntBASIC17.33■□□□□ 0.36
MSH3P20585 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.33■□□□□ 0.36
MSH3P20585 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MSH3P20585 AC003669.1-201ENST00000334569 611 ntBASIC17.33■□□□□ 0.36
MSH3P20585 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSH3P20585 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSH3P20585 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
MSH3P20585 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSH3P20585 KLF4P1-201ENST00000412782 1185 ntBASIC17.33■□□□□ 0.36
MSH3P20585 RBM17P3-201ENST00000417687 1192 ntBASIC17.33■□□□□ 0.36
MSH3P20585 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSH3P20585 STK19B-204ENST00000512515 211 ntBASIC17.33■□□□□ 0.36
MSH3P20585 AC106795.1-205ENST00000512851 1056 ntBASIC17.33■□□□□ 0.36
MSH3P20585 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MSH3P20585 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.33■□□□□ 0.36
MSH3P20585 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
MSH3P20585 STK25P1-201ENST00000585406 838 ntBASIC17.33■□□□□ 0.36
MSH3P20585 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MSH3P20585 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MSH3P20585 MTDHP3-201ENST00000594186 672 ntBASIC17.33■□□□□ 0.36
MSH3P20585 AL139327.4-201ENST00000612362 153 ntBASIC17.33■□□□□ 0.36
MSH3P20585 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MSH3P20585 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MSH3P20585 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSH3P20585 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
MSH3P20585 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.33■□□□□ 0.36
MSH3P20585 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
MSH3P20585 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSH3P20585 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
MSH3P20585 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.33■□□□□ 0.36
MSH3P20585 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 127 ms