Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB1P09429 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HMGB1P09429 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB1P09429 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB1P09429 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB1P09429 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB1P09429 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
HMGB1P09429 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB1P09429 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB1P09429 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB1P09429 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.53■□□□□ 0.88
HMGB1P09429 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB1P09429 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB1P09429 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB1P09429 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB1P09429 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.53■□□□□ 0.88
HMGB1P09429 SIGLEC30P-201ENST00000455569 941 ntBASIC20.53■□□□□ 0.88
HMGB1P09429 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.53■□□□□ 0.88
HMGB1P09429 AC138894.3-201ENST00000603787 634 ntBASIC20.53■□□□□ 0.88
HMGB1P09429 AC073592.4-201ENST00000623827 446 ntBASIC20.53■□□□□ 0.88
HMGB1P09429 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC20.53■□□□□ 0.88
HMGB1P09429 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.53■□□□□ 0.88
HMGB1P09429 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC20.53■□□□□ 0.88
HMGB1P09429 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB1P09429 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC20.53■□□□□ 0.88
HMGB1P09429 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC20.53■□□□□ 0.88
HMGB1P09429 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.53■□□□□ 0.88
HMGB1P09429 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB1P09429 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
HMGB1P09429 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB1P09429 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB1P09429 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.53■□□□□ 0.88
HMGB1P09429 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HMGB1P09429 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.52■□□□□ 0.88
HMGB1P09429 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.52■□□□□ 0.88
HMGB1P09429 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.52■□□□□ 0.88
HMGB1P09429 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB1P09429 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.52■□□□□ 0.88
HMGB1P09429 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
HMGB1P09429 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB1P09429 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB1P09429 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
HMGB1P09429 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB1P09429 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB1P09429 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB1P09429 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.52■□□□□ 0.88
HMGB1P09429 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB1P09429 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB1P09429 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB1P09429 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
HMGB1P09429 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.88
HMGB1P09429 FOSL1P1-201ENST00000511041 816 ntBASIC20.52■□□□□ 0.88
HMGB1P09429 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HMGB1P09429 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.52■□□□□ 0.88
HMGB1P09429 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
HMGB1P09429 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.52■□□□□ 0.87
HMGB1P09429 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
HMGB1P09429 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB1P09429 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.51■□□□□ 0.87
HMGB1P09429 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB1P09429 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB1P09429 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB1P09429 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.51■□□□□ 0.87
HMGB1P09429 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB1P09429 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB1P09429 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB1P09429 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB1P09429 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB1P09429 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC20.51■□□□□ 0.87
HMGB1P09429 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB1P09429 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB1P09429 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB1P09429 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC20.51■□□□□ 0.87
HMGB1P09429 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB1P09429 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.51■□□□□ 0.87
HMGB1P09429 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB1P09429 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB1P09429 AP005117.1-201ENST00000584346 1413 ntBASIC20.51■□□□□ 0.87
HMGB1P09429 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
HMGB1P09429 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
HMGB1P09429 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB1P09429 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.51■□□□□ 0.87
HMGB1P09429 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB1P09429 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.51■□□□□ 0.87
HMGB1P09429 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
HMGB1P09429 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
HMGB1P09429 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.5■□□□□ 0.87
HMGB1P09429 AC079776.2-201ENST00000641154 1609 ntBASIC20.5■□□□□ 0.87
HMGB1P09429 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC20.5■□□□□ 0.87
HMGB1P09429 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC20.5■□□□□ 0.87
HMGB1P09429 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms