Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RB1P06400 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RB1P06400 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.29■□□□□ 0.52
RB1P06400 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
RB1P06400 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RB1P06400 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RB1P06400 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RB1P06400 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC18.29■□□□□ 0.52
RB1P06400 AC236430.1-201ENST00000402231 743 ntBASIC18.29■□□□□ 0.52
RB1P06400 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC18.29■□□□□ 0.52
RB1P06400 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.29■□□□□ 0.52
RB1P06400 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC18.29■□□□□ 0.52
RB1P06400 FAM207CP-201ENST00000443486 507 ntBASIC18.29■□□□□ 0.52
RB1P06400 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC18.29■□□□□ 0.52
RB1P06400 PUDP-206ENST00000540122 825 ntTSL 2 BASIC18.29■□□□□ 0.52
RB1P06400 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RB1P06400 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
RB1P06400 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC18.29■□□□□ 0.52
RB1P06400 AL135744.1-201ENST00000565098 629 ntBASIC18.29■□□□□ 0.52
RB1P06400 RN7SL204P-201ENST00000582831 262 ntBASIC18.29■□□□□ 0.52
RB1P06400 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC18.29■□□□□ 0.52
RB1P06400 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC18.29■□□□□ 0.52
RB1P06400 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC18.29■□□□□ 0.52
RB1P06400 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RB1P06400 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RB1P06400 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.29■□□□□ 0.52
RB1P06400 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.29■□□□□ 0.52
RB1P06400 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
RB1P06400 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RB1P06400 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
RB1P06400 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RB1P06400 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
RB1P06400 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.28■□□□□ 0.52
RB1P06400 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.28■□□□□ 0.52
RB1P06400 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
RB1P06400 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RB1P06400 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RB1P06400 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RB1P06400 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
RB1P06400 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RB1P06400 GPS2P2-201ENST00000430745 888 ntBASIC18.28■□□□□ 0.52
RB1P06400 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
RB1P06400 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.28■□□□□ 0.52
RB1P06400 AC005225.4-201ENST00000557330 545 ntBASIC18.28■□□□□ 0.52
RB1P06400 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.28■□□□□ 0.52
RB1P06400 KRT8P23-201ENST00000560090 1207 ntBASIC18.28■□□□□ 0.52
RB1P06400 AC140878.1-201ENST00000565277 250 ntBASIC18.28■□□□□ 0.52
RB1P06400 INO80E-210ENST00000567705 880 ntTSL 3 BASIC18.28■□□□□ 0.52
RB1P06400 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18.28■□□□□ 0.52
RB1P06400 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RB1P06400 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
RB1P06400 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RB1P06400 AC098818.2-201ENST00000564925 2320 ntBASIC18.28■□□□□ 0.52
RB1P06400 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
RB1P06400 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC18.28■□□□□ 0.52
RB1P06400 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RB1P06400 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RB1P06400 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RB1P06400 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
RB1P06400 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.27■□□□□ 0.52
RB1P06400 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
RB1P06400 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RB1P06400 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.27■□□□□ 0.52
RB1P06400 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
RB1P06400 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RB1P06400 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.27■□□□□ 0.52
RB1P06400 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.27■□□□□ 0.52
RB1P06400 AL020996.1-203ENST00000536896 2307 ntBASIC18.27■□□□□ 0.52
RB1P06400 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.27■□□□□ 0.52
RB1P06400 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RB1P06400 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
RB1P06400 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.27■□□□□ 0.52
RB1P06400 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RB1P06400 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RB1P06400 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.27■□□□□ 0.52
RB1P06400 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.27■□□□□ 0.52
RB1P06400 RBPMS2P1-201ENST00000437762 623 ntBASIC18.27■□□□□ 0.52
RB1P06400 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.27■□□□□ 0.52
RB1P06400 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.27■□□□□ 0.52
RB1P06400 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.27■□□□□ 0.52
RB1P06400 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RB1P06400 AC012645.4-201ENST00000610691 1061 ntBASIC18.27■□□□□ 0.52
RB1P06400 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RB1P06400 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC18.27■□□□□ 0.52
RB1P06400 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC18.27■□□□□ 0.52
RB1P06400 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.27■□□□□ 0.52
RB1P06400 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
RB1P06400 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
RB1P06400 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RB1P06400 KRT18P55-202ENST00000578578 1546 ntBASIC18.27■□□□□ 0.51
RB1P06400 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
RB1P06400 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.27■□□□□ 0.51
RB1P06400 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.27■□□□□ 0.51
RB1P06400 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RB1P06400 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.26■□□□□ 0.51
RB1P06400 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RB1P06400 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RB1P06400 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.26■□□□□ 0.51
RB1P06400 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.26■□□□□ 0.51
RB1P06400 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms