Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 AC010460.3-201ENST00000511359 1579 ntBASIC18.01■□□□□ 0.47
PCDH9Q9HC56 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 AC246785.2-201ENST00000432512 513 ntBASIC18.01■□□□□ 0.47
PCDH9Q9HC56 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 AC092119.3-201ENST00000612618 583 ntBASIC18.01■□□□□ 0.47
PCDH9Q9HC56 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.01■□□□□ 0.47
PCDH9Q9HC56 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCDH9Q9HC56 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDH9Q9HC56 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18■□□□□ 0.47
PCDH9Q9HC56 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
PCDH9Q9HC56 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18■□□□□ 0.47
PCDH9Q9HC56 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18■□□□□ 0.47
PCDH9Q9HC56 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDH9Q9HC56 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDH9Q9HC56 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
PCDH9Q9HC56 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PCDH9Q9HC56 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDH9Q9HC56 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDH9Q9HC56 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PCDH9Q9HC56 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18■□□□□ 0.47
PCDH9Q9HC56 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
PCDH9Q9HC56 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDH9Q9HC56 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
PCDH9Q9HC56 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDH9Q9HC56 SLC25A1P3-201ENST00000395415 828 ntBASIC18■□□□□ 0.47
PCDH9Q9HC56 LINC00265-3P-201ENST00000447588 903 ntBASIC18■□□□□ 0.47
PCDH9Q9HC56 TOB2P1-201ENST00000469761 992 ntBASIC18■□□□□ 0.47
PCDH9Q9HC56 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18■□□□□ 0.47
PCDH9Q9HC56 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDH9Q9HC56 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18■□□□□ 0.47
PCDH9Q9HC56 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18■□□□□ 0.47
PCDH9Q9HC56 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18■□□□□ 0.47
PCDH9Q9HC56 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18■□□□□ 0.47
PCDH9Q9HC56 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18■□□□□ 0.47
PCDH9Q9HC56 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
PCDH9Q9HC56 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
PCDH9Q9HC56 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
PCDH9Q9HC56 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDH9Q9HC56 AC233702.3-201ENST00000578656 1387 ntBASIC18■□□□□ 0.47
PCDH9Q9HC56 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18■□□□□ 0.47
PCDH9Q9HC56 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
PCDH9Q9HC56 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDH9Q9HC56 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDH9Q9HC56 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDH9Q9HC56 AC106886.4-201ENST00000623557 2502 ntBASIC18■□□□□ 0.47
PCDH9Q9HC56 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDH9Q9HC56 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCDH9Q9HC56 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
PCDH9Q9HC56 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDH9Q9HC56 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH9Q9HC56 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH9Q9HC56 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH9Q9HC56 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH9Q9HC56 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH9Q9HC56 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH9Q9HC56 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH9Q9HC56 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH9Q9HC56 AC091607.1-201ENST00000490318 1060 ntBASIC17.99■□□□□ 0.47
PCDH9Q9HC56 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDH9Q9HC56 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.99■□□□□ 0.47
PCDH9Q9HC56 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH9Q9HC56 AC092329.2-201ENST00000598402 547 ntBASIC17.99■□□□□ 0.47
PCDH9Q9HC56 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH9Q9HC56 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
PCDH9Q9HC56 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.99■□□□□ 0.47
PCDH9Q9HC56 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDH9Q9HC56 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH9Q9HC56 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
PCDH9Q9HC56 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms