Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDX2Q99626 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDX2Q99626 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CDX2Q99626 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18■□□□□ 0.47
CDX2Q99626 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
CDX2Q99626 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
CDX2Q99626 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18■□□□□ 0.47
CDX2Q99626 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18■□□□□ 0.47
CDX2Q99626 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDX2Q99626 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC18■□□□□ 0.47
CDX2Q99626 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC18■□□□□ 0.47
CDX2Q99626 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDX2Q99626 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC18■□□□□ 0.47
CDX2Q99626 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC18■□□□□ 0.47
CDX2Q99626 AC135586.1-201ENST00000539323 574 ntBASIC18■□□□□ 0.47
CDX2Q99626 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
CDX2Q99626 TEX28P1-201ENST00000613479 1221 ntBASIC18■□□□□ 0.47
CDX2Q99626 TEX28P2-201ENST00000617764 1221 ntBASIC18■□□□□ 0.47
CDX2Q99626 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC18■□□□□ 0.47
CDX2Q99626 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CDX2Q99626 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CDX2Q99626 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDX2Q99626 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18■□□□□ 0.47
CDX2Q99626 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18■□□□□ 0.47
CDX2Q99626 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDX2Q99626 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18■□□□□ 0.47
CDX2Q99626 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDX2Q99626 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CDX2Q99626 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CDX2Q99626 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.99■□□□□ 0.47
CDX2Q99626 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDX2Q99626 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDX2Q99626 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.99■□□□□ 0.47
CDX2Q99626 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
CDX2Q99626 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC17.99■□□□□ 0.47
CDX2Q99626 HIST1H2BPS3-201ENST00000419683 341 ntBASIC17.99■□□□□ 0.47
CDX2Q99626 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.99■□□□□ 0.47
CDX2Q99626 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDX2Q99626 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.99■□□□□ 0.47
CDX2Q99626 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC17.99■□□□□ 0.47
CDX2Q99626 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.99■□□□□ 0.47
CDX2Q99626 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CDX2Q99626 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CDX2Q99626 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.99■□□□□ 0.47
CDX2Q99626 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
CDX2Q99626 AC007431.3-201ENST00000623221 587 ntBASIC17.99■□□□□ 0.47
CDX2Q99626 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDX2Q99626 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CDX2Q99626 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CDX2Q99626 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDX2Q99626 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CDX2Q99626 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.99■□□□□ 0.47
CDX2Q99626 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CDX2Q99626 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CDX2Q99626 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.98■□□□□ 0.47
CDX2Q99626 AC012569.1-201ENST00000591191 1524 ntBASIC17.98■□□□□ 0.47
CDX2Q99626 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CDX2Q99626 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDX2Q99626 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDX2Q99626 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDX2Q99626 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDX2Q99626 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDX2Q99626 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDX2Q99626 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC17.98■□□□□ 0.47
CDX2Q99626 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.98■□□□□ 0.47
CDX2Q99626 FUZ-207ENST00000526575 482 ntTSL 4 BASIC17.98■□□□□ 0.47
CDX2Q99626 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC17.98■□□□□ 0.47
CDX2Q99626 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CDX2Q99626 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.98■□□□□ 0.47
CDX2Q99626 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.98■□□□□ 0.47
CDX2Q99626 AC103810.3-201ENST00000583567 96 ntBASIC17.98■□□□□ 0.47
CDX2Q99626 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CDX2Q99626 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC17.98■□□□□ 0.47
CDX2Q99626 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CDX2Q99626 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.98■□□□□ 0.47
CDX2Q99626 AC020907.1-201ENST00000616460 1350 ntBASIC17.98■□□□□ 0.47
CDX2Q99626 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC17.98■□□□□ 0.47
CDX2Q99626 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC17.98■□□□□ 0.47
CDX2Q99626 PHGDH-209ENST00000641074 1780 ntBASIC17.98■□□□□ 0.47
CDX2Q99626 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CDX2Q99626 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
CDX2Q99626 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.98■□□□□ 0.47
CDX2Q99626 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDX2Q99626 AL023806.1-201ENST00000603994 1649 ntBASIC17.98■□□□□ 0.47
CDX2Q99626 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDX2Q99626 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC17.97■□□□□ 0.47
CDX2Q99626 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDX2Q99626 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC17.97■□□□□ 0.47
CDX2Q99626 AP3S2-216ENST00000617003 1561 ntBASIC17.97■□□□□ 0.47
CDX2Q99626 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CDX2Q99626 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
CDX2Q99626 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CDX2Q99626 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDX2Q99626 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.97■□□□□ 0.47
CDX2Q99626 MIR1908-201ENST00000410394 80 ntBASIC17.97■□□□□ 0.47
CDX2Q99626 TMEM14DP-201ENST00000422205 345 ntBASIC17.97■□□□□ 0.47
CDX2Q99626 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CDX2Q99626 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.97■□□□□ 0.47
CDX2Q99626 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
CDX2Q99626 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms