Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 AC009533.2-201ENST00000543664 586 ntBASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 MTDHP3-201ENST00000594186 672 ntBASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4CQ96CF2 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 AC096633.1-201ENST00000422446 749 ntBASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 AC005104.2-201ENST00000427818 678 ntBASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC20.79■□□□□ 0.92
CHMP4CQ96CF2 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 TBC1D3P5-201ENST00000579401 1545 ntBASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 FAM197Y8-203ENST00000450145 560 ntBASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 SLC25A6P4-201ENST00000586535 553 ntBASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
CHMP4CQ96CF2 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC20.77■□□□□ 0.92
CHMP4CQ96CF2 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
CHMP4CQ96CF2 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CHMP4CQ96CF2 AC004817.3-201ENST00000602957 2129 ntBASIC20.77■□□□□ 0.92
CHMP4CQ96CF2 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CHMP4CQ96CF2 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHMP4CQ96CF2 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHMP4CQ96CF2 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHMP4CQ96CF2 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CHMP4CQ96CF2 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC20.77■□□□□ 0.92
CHMP4CQ96CF2 AC011467.2-201ENST00000598425 242 ntBASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms