Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 LINC02012-201ENST00000608206 1725 ntBASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 AC093525.9-201ENST00000624961 1746 ntBASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 AC097374.2-201ENST00000618617 1306 ntBASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ATG4AQ8WYN0 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
ATG4AQ8WYN0 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
ATG4AQ8WYN0 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
ATG4AQ8WYN0 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
ATG4AQ8WYN0 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.08■□□□□ 0.49
ATG4AQ8WYN0 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
ATG4AQ8WYN0 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
ATG4AQ8WYN0 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
ATG4AQ8WYN0 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
ATG4AQ8WYN0 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 AC109462.3-201ENST00000573934 613 ntBASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 AC079328.2-201ENST00000561241 3354 ntBASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
ATG4AQ8WYN0 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 AC063952.2-201ENST00000498792 1227 ntBASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.07■□□□□ 0.48
ATG4AQ8WYN0 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
ATG4AQ8WYN0 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms