Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 IL9RP2-201ENST00000423948 1312 ntBASIC17.74■□□□□ 0.43
SHROOM3Q8TF72 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 AC060834.1-201ENST00000443027 2032 ntBASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 MTDHP3-201ENST00000594186 672 ntBASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 AL121912.1-201ENST00000603683 238 ntBASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 AL023806.1-201ENST00000603994 1649 ntBASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
SHROOM3Q8TF72 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 STK25P1-201ENST00000585406 838 ntBASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SHROOM3Q8TF72 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 AL590627.1-203ENST00000421194 1026 ntBASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 AP001005.1-201ENST00000571755 1248 ntBASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 MTDHP4-201ENST00000600287 670 ntBASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.71■□□□□ 0.43
SHROOM3Q8TF72 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms