Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 DDAH2-219ENST00000483792 898 ntTSL 515.23■□□□□ 0.038e-11■□□□□ 8.9
DDX55Q8NHQ9 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC15.11■□□□□ 0.018e-11■□□□□ 8.9
DDX55Q8NHQ9 SNX1-211ENST00000560829 1869 ntTSL 5 BASIC14.53□□□□□ -0.088e-11■□□□□ 8.9
DDX55Q8NHQ9 SNX1-201ENST00000261889 3373 ntTSL 2 BASIC13.26□□□□□ -0.298e-11■□□□□ 8.9
DDX55Q8NHQ9 SNX1-212ENST00000560861 850 ntTSL 313.04□□□□□ -0.328e-11■□□□□ 8.9
DDX55Q8NHQ9 RASSF5-206ENST00000581888 4499 ntTSL 211.1□□□□□ -0.638e-11■□□□□ 8.9
DDX55Q8NHQ9 SNX1-202ENST00000380285 8119 ntTSL 1 (best)10.78□□□□□ -0.688e-11■□□□□ 8.9
DDX55Q8NHQ9 C7orf55-LUC7L2-201ENST00000541515 1661 ntAPPRIS P1 TSL 2 BASIC10.14□□□□□ -0.798e-11■□□□□ 8.9
DDX55Q8NHQ9 RASSF5-203ENST00000579942 3279 ntTSL 29.88□□□□□ -0.838e-11■□□□□ 8.9
DDX55Q8NHQ9 RASSF5-209ENST00000636182 3427 ntTSL 5 BASIC9.02□□□□□ -0.968e-11■□□□□ 8.9
DDX55Q8NHQ9 RPL13A-208ENST00000477613 796 ntTSL 521.47■■□□□ 1.032e-13■□□□□ 8.9
DDX55Q8NHQ9 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.033e-12■□□□□ 8.9
DDX55Q8NHQ9 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.013e-12■□□□□ 8.9
DDX55Q8NHQ9 AC017083.4-201ENST00000406334 2306 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.183e-12■□□□□ 8.9
DDX55Q8NHQ9 UBE2Z-207ENST00000513342 4250 ntTSL 28.43□□□□□ -1.063e-12■□□□□ 8.9
DDX55Q8NHQ9 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC22.26■■□□□ 1.151e-17■□□□□ 8.9
DDX55Q8NHQ9 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC31.02■■■□□ 2.562e-7■□□□□ 8.9
DDX55Q8NHQ9 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC28.85■■■□□ 2.212e-7■□□□□ 8.9
DDX55Q8NHQ9 ABHD12-205ENST00000465694 474 ntTSL 28.58□□□□□ -1.042e-7■□□□□ 8.9
DDX55Q8NHQ9 ARF1-208ENST00000478336 930 ntTSL 229.06■■■□□ 2.248e-20■□□□□ 8.9
DDX55Q8NHQ9 ARF1-203ENST00000470558 820 ntTSL 218.91■□□□□ 0.628e-20■□□□□ 8.9
DDX55Q8NHQ9 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC22.69■■□□□ 1.225e-46■□□□□ 8.9
DDX55Q8NHQ9 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.175e-46■□□□□ 8.9
DDX55Q8NHQ9 CIRBP-234ENST00000591659 587 ntTSL 225.37■■□□□ 1.657e-15■□□□□ 8.9
DDX55Q8NHQ9 TM4SF1-204ENST00000493348 976 ntTSL 29.71□□□□□ -0.864e-13■□□□□ 8.9
DDX55Q8NHQ9 STARD10-205ENST00000535267 579 ntTSL 231.94■■■□□ 2.73e-7■□□□□ 8.9
DDX55Q8NHQ9 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC31.3■■■□□ 2.63e-7■□□□□ 8.9
DDX55Q8NHQ9 STARD10-203ENST00000535054 460 ntTSL 330.73■■■□□ 2.513e-7■□□□□ 8.9
DDX55Q8NHQ9 STARD10-210ENST00000537947 1100 ntTSL 330.2■■■□□ 2.433e-7■□□□□ 8.9
DDX55Q8NHQ9 BBC3-205ENST00000598636 900 ntTSL 229■■■□□ 2.231e-10■□□□□ 8.9
DDX55Q8NHQ9 GUCD1-201ENST00000398245 1593 ntTSL 528.41■■■□□ 2.143e-7■□□□□ 8.9
DDX55Q8NHQ9 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.822e-8■□□□□ 8.9
DDX55Q8NHQ9 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC25.78■■□□□ 1.723e-7■□□□□ 8.9
DDX55Q8NHQ9 STARD10-216ENST00000542989 839 ntTSL 324.7■■□□□ 1.543e-7■□□□□ 8.9
DDX55Q8NHQ9 AP005263.1-202ENST00000578850 198 ntTSL 223.47■■□□□ 1.352e-8■□□□□ 8.9
DDX55Q8NHQ9 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC23.47■■□□□ 1.352e-8■□□□□ 8.9
DDX55Q8NHQ9 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.233e-7■□□□□ 8.9
DDX55Q8NHQ9 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.233e-7■□□□□ 8.9
DDX55Q8NHQ9 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC22.42■■□□□ 1.183e-7■□□□□ 8.9
DDX55Q8NHQ9 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.173e-7■□□□□ 8.9
DDX55Q8NHQ9 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.113e-7■□□□□ 8.9
DDX55Q8NHQ9 NAP1L4-211ENST00000526023 477 ntTSL 521.51■■□□□ 1.033e-7■□□□□ 8.9
DDX55Q8NHQ9 STARD10-206ENST00000536290 438 ntTSL 521.5■■□□□ 1.033e-7■□□□□ 8.9
DDX55Q8NHQ9 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.15■□□□□ 0.983e-7■□□□□ 8.9
DDX55Q8NHQ9 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.01■□□□□ 0.953e-7■□□□□ 8.9
DDX55Q8NHQ9 STARD10-214ENST00000539138 511 ntTSL 320.79■□□□□ 0.923e-7■□□□□ 8.9
DDX55Q8NHQ9 ACBD4-205ENST00000585553 2241 ntTSL 220.28■□□□□ 0.843e-7■□□□□ 8.9
DDX55Q8NHQ9 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.28■□□□□ 0.843e-7■□□□□ 8.9
DDX55Q8NHQ9 STARD10-211ENST00000538009 985 ntTSL 1 (best)20.21■□□□□ 0.833e-7■□□□□ 8.9
DDX55Q8NHQ9 STARD10-221ENST00000546314 620 ntTSL 319.56■□□□□ 0.723e-7■□□□□ 8.9
DDX55Q8NHQ9 EIF4G1-234ENST00000478291 564 ntTSL 219.48■□□□□ 0.713e-7■□□□□ 8.9
DDX55Q8NHQ9 SDF4-204ENST00000459994 604 ntTSL 519.14■□□□□ 0.653e-7■□□□□ 8.9
DDX55Q8NHQ9 STARD10-207ENST00000536377 798 ntTSL 517.21■□□□□ 0.353e-7■□□□□ 8.9
DDX55Q8NHQ9 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.263e-7■□□□□ 8.9
DDX55Q8NHQ9 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.223e-7■□□□□ 8.9
DDX55Q8NHQ9 STARD10-215ENST00000540587 558 ntTSL 416.25■□□□□ 0.193e-7■□□□□ 8.9
DDX55Q8NHQ9 EIF4G1-231ENST00000464548 637 ntTSL 515.26■□□□□ 0.033e-7■□□□□ 8.9
DDX55Q8NHQ9 EIF4G1-211ENST00000422614 750 ntTSL 513.07□□□□□ -0.323e-7■□□□□ 8.9
DDX55Q8NHQ9 GUCD1-213ENST00000621833 3584 ntTSL 1 (best) BASIC12.05□□□□□ -0.483e-7■□□□□ 8.9
DDX55Q8NHQ9 GUCD1-211ENST00000490922 567 ntTSL 310.03□□□□□ -0.83e-7■□□□□ 8.9
DDX55Q8NHQ9 NDUFV2-202ENST00000400033 942 ntTSL 3 BASIC8.84□□□□□ -0.992e-8■□□□□ 8.9
DDX55Q8NHQ9 NAP1L4-210ENST00000492685 850 ntTSL 57.32□□□□□ -1.243e-7■□□□□ 8.9
DDX55Q8NHQ9 MIR6820-201ENST00000611508 62 ntBASIC6.51□□□□□ -1.373e-7■□□□□ 8.9
DDX55Q8NHQ9 NDUFV2-203ENST00000465096 643 ntTSL 26.43□□□□□ -1.382e-8■□□□□ 8.9
DDX55Q8NHQ9 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.412e-13■□□□□ 8.9
DDX55Q8NHQ9 NDUFV2-205ENST00000474740 264 ntTSL 24□□□□□ -1.777e-35■□□□□ 8.9
DDX55Q8NHQ9 EIF3G-211ENST00000590940 762 ntTSL 313.74□□□□□ -0.212e-7■□□□□ 8.9
DDX55Q8NHQ9 HSPE1-207ENST00000495200 537 ntTSL 322.44■■□□□ 1.183e-13■□□□□ 8.9
DDX55Q8NHQ9 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.843e-13■□□□□ 8.9
DDX55Q8NHQ9 HSPE1-206ENST00000473395 569 ntTSL 217.09■□□□□ 0.333e-13■□□□□ 8.9
DDX55Q8NHQ9 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.213e-13■□□□□ 8.9
DDX55Q8NHQ9 HNRNPK-201ENST00000351839 2652 ntAPPRIS ALT1 TSL 1 (best) BASIC9.87□□□□□ -0.833e-13■□□□□ 8.9
DDX55Q8NHQ9 HNRNPK-205ENST00000376281 2928 ntAPPRIS P4 TSL 1 (best) BASIC9.03□□□□□ -0.963e-13■□□□□ 8.9
DDX55Q8NHQ9 HNRNPK-211ENST00000493362 868 ntTSL 27.07□□□□□ -1.283e-13■□□□□ 8.9
DDX55Q8NHQ9 C9orf16-203ENST00000489240 573 ntTSL 321.29■■□□□ 12e-9■□□□□ 8.9
DDX55Q8NHQ9 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC16.71■□□□□ 0.272e-9■□□□□ 8.9
DDX55Q8NHQ9 NUDCD2-201ENST00000302764 8005 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.692e-9■□□□□ 8.9
DDX55Q8NHQ9 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC21.42■■□□□ 1.026e-7■□□□□ 8.9
DDX55Q8NHQ9 ARHGEF2-208ENST00000470541 1877 ntTSL 321.06■□□□□ 0.966e-7■□□□□ 8.9
DDX55Q8NHQ9 ARHGEF2-206ENST00000462460 4438 ntTSL 5 BASIC14.11□□□□□ -0.156e-7■□□□□ 8.9
DDX55Q8NHQ9 ARHGEF2-203ENST00000361247 4149 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.326e-7■□□□□ 8.9
DDX55Q8NHQ9 ARHGEF2-202ENST00000313695 4080 ntTSL 1 (best) BASIC12.42□□□□□ -0.426e-7■□□□□ 8.9
DDX55Q8NHQ9 ARHGEF2-214ENST00000477754 883 ntTSL 56.65□□□□□ -1.346e-7■□□□□ 8.9
DDX55Q8NHQ9 SELENOP-203ENST00000506577 2204 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.984e-42■□□□□ 8.8
DDX55Q8NHQ9 IL32-214ENST00000528652 519 ntTSL 324.02■■□□□ 1.444e-9■□□□□ 8.8
DDX55Q8NHQ9 PIM1-201ENST00000373509 2650 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.314e-23■□□□□ 8.8
DDX55Q8NHQ9 NDUFA11-203ENST00000591160 604 ntTSL 323.94■■□□□ 1.428e-17■□□□□ 8.8
DDX55Q8NHQ9 RPL36-208ENST00000590786 907 ntTSL 224.39■■□□□ 1.492e-9■□□□□ 8.8
DDX55Q8NHQ9 DDOST-205ENST00000477229 766 ntTSL 220.63■□□□□ 0.891e-14■□□□□ 8.8
DDX55Q8NHQ9 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.641e-14■□□□□ 8.8
DDX55Q8NHQ9 DDOST-203ENST00000464364 502 ntTSL 517.3■□□□□ 0.361e-14■□□□□ 8.8
DDX55Q8NHQ9 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.071e-14■□□□□ 8.8
DDX55Q8NHQ9 AJUBA-207ENST00000555479 558 ntTSL 414.49□□□□□ -0.091e-14■□□□□ 8.8
DDX55Q8NHQ9 AL132780.3-201ENST00000555074 835 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.381e-14■□□□□ 8.8
DDX55Q8NHQ9 AJUBA-206ENST00000553911 567 ntTSL 510.91□□□□□ -0.661e-14■□□□□ 8.8
DDX55Q8NHQ9 AJUBA-203ENST00000397388 2648 ntTSL 2 BASIC9.93□□□□□ -0.821e-14■□□□□ 8.8
DDX55Q8NHQ9 AJUBA-204ENST00000553592 418 ntTSL 59.12□□□□□ -0.951e-14■□□□□ 8.8
DDX55Q8NHQ9 AJUBA-208ENST00000556731 651 ntTSL 49.12□□□□□ -0.951e-14■□□□□ 8.8
DDX55Q8NHQ9 HBE1-203ENST00000396895 578 ntTSL 56.39□□□□□ -1.391e-323■□□□□ 8.8
DDX55Q8NHQ9 SEPT2-211ENST00000421717 818 ntTSL 421.97■■□□□ 1.111e-24■□□□□ 8.8
Retrieved 100 of 15,504 protein–RNA pairs in 75.2 ms