Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AL356309.3-201ENST00000624132 1934 ntBASIC5.41□□□□□ -1.54
SYNE1Q8NF91 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 PCDH8P1-201ENST00000428983 2773 ntBASIC5.41□□□□□ -1.54
SYNE1Q8NF91 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 PNMT-203ENST00000581428 677 ntTSL 2 BASIC5.41□□□□□ -1.54
SYNE1Q8NF91 AC132938.6-201ENST00000623828 1655 ntBASIC5.41□□□□□ -1.54
SYNE1Q8NF91 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 MIR1233-2-201ENST00000408138 82 ntBASIC5.4□□□□□ -1.54
SYNE1Q8NF91 MIR1233-1-201ENST00000408722 82 ntBASIC5.4□□□□□ -1.54
SYNE1Q8NF91 DDT-206ENST00000430101 573 ntTSL 2 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 RPL13AP23-201ENST00000480739 586 ntBASIC5.4□□□□□ -1.54
SYNE1Q8NF91 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 AP006288.1-201ENST00000446065 395 ntBASIC5.4□□□□□ -1.54
SYNE1Q8NF91 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 KIRREL3-AS3-201ENST00000404882 831 ntBASIC5.4□□□□□ -1.54
SYNE1Q8NF91 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 AL691403.2-201ENST00000618460 490 ntBASIC5.4□□□□□ -1.54
SYNE1Q8NF91 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SYNE1Q8NF91 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC5.4□□□□□ -1.55
SYNE1Q8NF91 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.55
SYNE1Q8NF91 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
SYNE1Q8NF91 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
SYNE1Q8NF91 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC5.4□□□□□ -1.55
SYNE1Q8NF91 AL031432.2-201ENST00000566714 459 ntBASIC5.4□□□□□ -1.55
SYNE1Q8NF91 AL928711.1-201ENST00000570165 459 ntBASIC5.4□□□□□ -1.55
SYNE1Q8NF91 GPR32P1-201ENST00000601788 811 ntBASIC5.4□□□□□ -1.55
SYNE1Q8NF91 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms