Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.32■□□□□ 0.36
ZNF549Q6P9A3 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.32■□□□□ 0.36
ZNF549Q6P9A3 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
ZNF549Q6P9A3 BNIP3P18-201ENST00000593976 575 ntBASIC17.32■□□□□ 0.36
ZNF549Q6P9A3 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF549Q6P9A3 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.32■□□□□ 0.36
ZNF549Q6P9A3 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF549Q6P9A3 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
ZNF549Q6P9A3 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.32■□□□□ 0.36
ZNF549Q6P9A3 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
ZNF549Q6P9A3 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF549Q6P9A3 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
ZNF549Q6P9A3 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF549Q6P9A3 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
ZNF549Q6P9A3 NSUN5P1-202ENST00000421140 1535 ntBASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 NSUN5P2-203ENST00000457352 1529 ntBASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 AL353593.2-201ENST00000602529 1483 ntBASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 MYCLP1-201ENST00000372451 1075 ntBASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 LINC00265-3P-201ENST00000447588 903 ntBASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 STK25P1-201ENST00000585406 838 ntBASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
ZNF549Q6P9A3 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 ARMC10P1-201ENST00000313754 855 ntBASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 Z69720.1-201ENST00000601483 472 ntBASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 AC010331.1-201ENST00000611423 582 ntBASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 AC046185.3-201ENST00000623228 1824 ntBASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
ZNF549Q6P9A3 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF549Q6P9A3 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.29■□□□□ 0.36
ZNF549Q6P9A3 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.29■□□□□ 0.36
ZNF549Q6P9A3 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
ZNF549Q6P9A3 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF549Q6P9A3 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF549Q6P9A3 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF549Q6P9A3 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF549Q6P9A3 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF549Q6P9A3 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ZNF549Q6P9A3 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms