Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 AC109462.3-201ENST00000573934 613 ntBASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 AC104692.2-201ENST00000603054 253 ntBASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 AL139327.4-201ENST00000612362 153 ntBASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.06■□□□□ 0.32
PTCHD3Q3KNS1 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 AL160237.2-201ENST00000556165 472 ntBASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTCHD3Q3KNS1 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 AL049757.1-201ENST00000616842 1596 ntBASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms