Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA3P55318 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA3P55318 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA3P55318 BANP-204ENST00000393208 2283 ntTSL 2 BASIC13.15□□□□□ -0.3
FOXA3P55318 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA3P55318 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC13.15□□□□□ -0.3
FOXA3P55318 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA3P55318 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.31
FOXA3P55318 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC13.15□□□□□ -0.31
FOXA3P55318 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
FOXA3P55318 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA3P55318 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA3P55318 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC13.14□□□□□ -0.31
FOXA3P55318 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC13.14□□□□□ -0.31
FOXA3P55318 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
FOXA3P55318 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
FOXA3P55318 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA3P55318 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA3P55318 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
FOXA3P55318 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 KRASP1-201ENST00000407852 552 ntBASIC13.14□□□□□ -0.31
FOXA3P55318 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA3P55318 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
FOXA3P55318 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC13.14□□□□□ -0.31
FOXA3P55318 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC13.14□□□□□ -0.31
FOXA3P55318 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC13.14□□□□□ -0.31
FOXA3P55318 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC13.14□□□□□ -0.31
FOXA3P55318 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
FOXA3P55318 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA3P55318 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
FOXA3P55318 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
FOXA3P55318 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC13.13□□□□□ -0.31
FOXA3P55318 AL356309.3-201ENST00000624132 1934 ntBASIC13.13□□□□□ -0.31
FOXA3P55318 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
FOXA3P55318 AC005915.1-201ENST00000624912 2018 ntBASIC13.13□□□□□ -0.31
FOXA3P55318 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
FOXA3P55318 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
FOXA3P55318 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
FOXA3P55318 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC13.13□□□□□ -0.31
FOXA3P55318 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC13.13□□□□□ -0.31
FOXA3P55318 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
FOXA3P55318 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 KRT17P3-201ENST00000420566 1262 ntBASIC13.13□□□□□ -0.31
FOXA3P55318 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC13.13□□□□□ -0.31
FOXA3P55318 KRT18P23-201ENST00000435622 1283 ntBASIC13.13□□□□□ -0.31
FOXA3P55318 MAP2K4P1-201ENST00000438453 1195 ntBASIC13.13□□□□□ -0.31
FOXA3P55318 CA15P1-201ENST00000481698 905 ntBASIC13.13□□□□□ -0.31
FOXA3P55318 UNC93B5-201ENST00000530315 699 ntBASIC13.13□□□□□ -0.31
FOXA3P55318 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC13.13□□□□□ -0.31
FOXA3P55318 AP000692.2-201ENST00000608391 879 ntBASIC13.13□□□□□ -0.31
FOXA3P55318 MIR5787-201ENST00000611784 55 ntBASIC13.13□□□□□ -0.31
FOXA3P55318 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
FOXA3P55318 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 CYP2T1P-202ENST00000641596 2535 ntBASIC13.13□□□□□ -0.31
FOXA3P55318 AL365209.1-201ENST00000624418 6473 ntBASIC13.13□□□□□ -0.31
FOXA3P55318 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
FOXA3P55318 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA3P55318 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms