Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
EPHB3P54753 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC18.16■□□□□ 0.5
EPHB3P54753 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.16■□□□□ 0.5
EPHB3P54753 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.16■□□□□ 0.5
EPHB3P54753 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.16■□□□□ 0.5
EPHB3P54753 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.16■□□□□ 0.5
EPHB3P54753 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
EPHB3P54753 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.16■□□□□ 0.5
EPHB3P54753 C20orf181-201ENST00000623918 480 ntBASIC18.16■□□□□ 0.5
EPHB3P54753 AC004877.2-201ENST00000623941 599 ntBASIC18.16■□□□□ 0.5
EPHB3P54753 AC010507.1-201ENST00000633895 436 ntBASIC18.16■□□□□ 0.5
EPHB3P54753 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.16■□□□□ 0.5
EPHB3P54753 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
EPHB3P54753 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.16■□□□□ 0.5
EPHB3P54753 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.16■□□□□ 0.5
EPHB3P54753 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
EPHB3P54753 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
EPHB3P54753 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
EPHB3P54753 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
EPHB3P54753 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
EPHB3P54753 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
EPHB3P54753 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
EPHB3P54753 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.15■□□□□ 0.5
EPHB3P54753 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
EPHB3P54753 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
EPHB3P54753 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
EPHB3P54753 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
EPHB3P54753 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
EPHB3P54753 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
EPHB3P54753 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
EPHB3P54753 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.15■□□□□ 0.5
EPHB3P54753 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
EPHB3P54753 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.15■□□□□ 0.5
EPHB3P54753 OR7E47P-204ENST00000575924 449 ntBASIC18.15■□□□□ 0.5
EPHB3P54753 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.15■□□□□ 0.5
EPHB3P54753 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
EPHB3P54753 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
EPHB3P54753 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
EPHB3P54753 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
EPHB3P54753 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
EPHB3P54753 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
EPHB3P54753 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.15■□□□□ 0.5
EPHB3P54753 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
EPHB3P54753 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
EPHB3P54753 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
EPHB3P54753 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.15■□□□□ 0.5
EPHB3P54753 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.15■□□□□ 0.5
EPHB3P54753 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.15■□□□□ 0.5
EPHB3P54753 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.14■□□□□ 0.5
EPHB3P54753 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
EPHB3P54753 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
EPHB3P54753 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
EPHB3P54753 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
EPHB3P54753 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
EPHB3P54753 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
EPHB3P54753 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
EPHB3P54753 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
EPHB3P54753 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.14■□□□□ 0.49
EPHB3P54753 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
EPHB3P54753 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
EPHB3P54753 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC18.14■□□□□ 0.49
EPHB3P54753 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.14■□□□□ 0.49
EPHB3P54753 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.14■□□□□ 0.49
EPHB3P54753 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.14■□□□□ 0.49
EPHB3P54753 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.14■□□□□ 0.49
EPHB3P54753 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.14■□□□□ 0.49
EPHB3P54753 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
EPHB3P54753 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.14■□□□□ 0.49
EPHB3P54753 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.14■□□□□ 0.49
EPHB3P54753 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
EPHB3P54753 AC007064.4-201ENST00000637740 555 ntBASIC18.14■□□□□ 0.49
EPHB3P54753 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
EPHB3P54753 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
EPHB3P54753 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
EPHB3P54753 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.49
EPHB3P54753 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.14■□□□□ 0.49
EPHB3P54753 BCAR1-209ENST00000546196 1340 ntBASIC18.14■□□□□ 0.49
EPHB3P54753 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.14■□□□□ 0.49
EPHB3P54753 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
EPHB3P54753 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
EPHB3P54753 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
EPHB3P54753 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
EPHB3P54753 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.14■□□□□ 0.49
EPHB3P54753 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
EPHB3P54753 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
EPHB3P54753 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
EPHB3P54753 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.14■□□□□ 0.49
EPHB3P54753 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
EPHB3P54753 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.13■□□□□ 0.49
EPHB3P54753 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.13■□□□□ 0.49
EPHB3P54753 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
EPHB3P54753 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
EPHB3P54753 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
EPHB3P54753 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
EPHB3P54753 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
EPHB3P54753 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
EPHB3P54753 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.13■□□□□ 0.49
EPHB3P54753 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
EPHB3P54753 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
EPHB3P54753 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms