Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIG3P49916 MIR662-201ENST00000384847 95 ntBASIC18.4■□□□□ 0.54
LIG3P49916 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIG3P49916 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.4■□□□□ 0.54
LIG3P49916 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.4■□□□□ 0.54
LIG3P49916 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIG3P49916 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.4■□□□□ 0.54
LIG3P49916 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.4■□□□□ 0.54
LIG3P49916 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.4■□□□□ 0.54
LIG3P49916 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
LIG3P49916 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LIG3P49916 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIG3P49916 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.4■□□□□ 0.54
LIG3P49916 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.4■□□□□ 0.54
LIG3P49916 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIG3P49916 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LIG3P49916 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LIG3P49916 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC18.4■□□□□ 0.54
LIG3P49916 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIG3P49916 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LIG3P49916 AC099343.3-201ENST00000605834 2503 ntBASIC18.4■□□□□ 0.54
LIG3P49916 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
LIG3P49916 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
LIG3P49916 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC18.39■□□□□ 0.54
LIG3P49916 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
LIG3P49916 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
LIG3P49916 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
LIG3P49916 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
LIG3P49916 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIG3P49916 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIG3P49916 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIG3P49916 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIG3P49916 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIG3P49916 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC18.39■□□□□ 0.53
LIG3P49916 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIG3P49916 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LIG3P49916 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.39■□□□□ 0.53
LIG3P49916 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.39■□□□□ 0.53
LIG3P49916 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.39■□□□□ 0.53
LIG3P49916 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.39■□□□□ 0.53
LIG3P49916 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIG3P49916 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIG3P49916 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
LIG3P49916 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LIG3P49916 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.39■□□□□ 0.53
LIG3P49916 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIG3P49916 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LIG3P49916 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIG3P49916 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC18.39■□□□□ 0.53
LIG3P49916 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIG3P49916 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.39■□□□□ 0.53
LIG3P49916 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC18.39■□□□□ 0.53
LIG3P49916 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
LIG3P49916 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIG3P49916 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LIG3P49916 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LIG3P49916 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.39■□□□□ 0.53
LIG3P49916 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIG3P49916 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIG3P49916 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIG3P49916 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIG3P49916 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIG3P49916 LINC01126-201ENST00000623515 1646 ntBASIC18.38■□□□□ 0.53
LIG3P49916 OR6D1P-203ENST00000641209 4860 ntBASIC18.38■□□□□ 0.53
LIG3P49916 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
LIG3P49916 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIG3P49916 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIG3P49916 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIG3P49916 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIG3P49916 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.38■□□□□ 0.53
LIG3P49916 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIG3P49916 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
LIG3P49916 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.38■□□□□ 0.53
LIG3P49916 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIG3P49916 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.38■□□□□ 0.53
LIG3P49916 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
LIG3P49916 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.38■□□□□ 0.53
LIG3P49916 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.38■□□□□ 0.53
LIG3P49916 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
LIG3P49916 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LIG3P49916 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
LIG3P49916 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIG3P49916 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIG3P49916 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
LIG3P49916 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
LIG3P49916 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.38■□□□□ 0.53
LIG3P49916 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
LIG3P49916 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC18.37■□□□□ 0.53
LIG3P49916 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIG3P49916 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIG3P49916 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.37■□□□□ 0.53
LIG3P49916 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIG3P49916 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.37■□□□□ 0.53
LIG3P49916 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIG3P49916 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LIG3P49916 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIG3P49916 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LIG3P49916 PCDHA14-201ENST00000506751 2298 ntBASIC18.37■□□□□ 0.53
LIG3P49916 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC18.37■□□□□ 0.53
LIG3P49916 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms