Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC15.19■□□□□ 0.02
COL8A1P27658 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL8A1P27658 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL8A1P27658 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL8A1P27658 AC107890.1-201ENST00000422478 521 ntBASIC15.19■□□□□ 0.02
COL8A1P27658 NME2P1-201ENST00000426182 414 ntBASIC15.19■□□□□ 0.02
COL8A1P27658 FAM58DP-201ENST00000428076 619 ntBASIC15.19■□□□□ 0.02
COL8A1P27658 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.19■□□□□ 0.02
COL8A1P27658 AL512638.1-201ENST00000457493 794 ntBASIC15.19■□□□□ 0.02
COL8A1P27658 NAA50-208ENST00000497255 789 ntTSL 5 BASIC15.19■□□□□ 0.02
COL8A1P27658 CXCL1P1-201ENST00000502804 216 ntBASIC15.19■□□□□ 0.02
COL8A1P27658 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.19■□□□□ 0.02
COL8A1P27658 CR383656.12-201ENST00000549567 513 ntBASIC15.19■□□□□ 0.02
COL8A1P27658 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC15.19■□□□□ 0.02
COL8A1P27658 AL606495.2-201ENST00000605867 535 ntBASIC15.19■□□□□ 0.02
COL8A1P27658 AC026120.1-201ENST00000611536 926 ntBASIC15.19■□□□□ 0.02
COL8A1P27658 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.19■□□□□ 0.02
COL8A1P27658 AC025048.6-201ENST00000634326 1161 ntBASIC15.19■□□□□ 0.02
COL8A1P27658 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC15.19■□□□□ 0.02
COL8A1P27658 SNAI3-AS1-205ENST00000568633 2096 ntBASIC15.19■□□□□ 0.02
COL8A1P27658 GID4-202ENST00000376345 1391 ntTSL 3 BASIC15.19■□□□□ 0.02
COL8A1P27658 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL8A1P27658 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL8A1P27658 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC15.19■□□□□ 0.02
COL8A1P27658 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC15.19■□□□□ 0.02
COL8A1P27658 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL8A1P27658 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL8A1P27658 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL8A1P27658 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL8A1P27658 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL8A1P27658 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL8A1P27658 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC15.18■□□□□ 0.02
COL8A1P27658 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
COL8A1P27658 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
COL8A1P27658 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
COL8A1P27658 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC15.18■□□□□ 0.02
COL8A1P27658 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC15.18■□□□□ 0.02
COL8A1P27658 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 ADH5P3-201ENST00000433842 1137 ntBASIC15.18■□□□□ 0.02
COL8A1P27658 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC15.18■□□□□ 0.02
COL8A1P27658 AL592309.1-201ENST00000443127 649 ntBASIC15.18■□□□□ 0.02
COL8A1P27658 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.18■□□□□ 0.02
COL8A1P27658 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 AC125807.1-201ENST00000483097 614 ntBASIC15.18■□□□□ 0.02
COL8A1P27658 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 AC069335.1-201ENST00000489972 472 ntBASIC15.18■□□□□ 0.02
COL8A1P27658 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.18■□□□□ 0.02
COL8A1P27658 AC112191.1-201ENST00000523689 701 ntBASIC15.18■□□□□ 0.02
COL8A1P27658 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC15.18■□□□□ 0.02
COL8A1P27658 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.18■□□□□ 0.02
COL8A1P27658 AL596325.1-201ENST00000563991 1082 ntBASIC15.18■□□□□ 0.02
COL8A1P27658 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.18■□□□□ 0.02
COL8A1P27658 GGTLC5P-201ENST00000617623 998 ntBASIC15.18■□□□□ 0.02
COL8A1P27658 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC15.18■□□□□ 0.02
COL8A1P27658 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
COL8A1P27658 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL8A1P27658 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
COL8A1P27658 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC15.17■□□□□ 0.02
COL8A1P27658 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC15.17■□□□□ 0.02
COL8A1P27658 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
COL8A1P27658 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 KLF4P1-201ENST00000412782 1185 ntBASIC15.17■□□□□ 0.02
COL8A1P27658 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
COL8A1P27658 RN7SL692P-201ENST00000464677 288 ntBASIC15.17■□□□□ 0.02
COL8A1P27658 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
COL8A1P27658 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.17■□□□□ 0.02
COL8A1P27658 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
COL8A1P27658 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL8A1P27658 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC15.17■□□□□ 0.02
COL8A1P27658 AC027307.3-201ENST00000594262 1100 ntBASIC15.17■□□□□ 0.02
COL8A1P27658 AL353135.1-201ENST00000606729 504 ntBASIC15.17■□□□□ 0.02
COL8A1P27658 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms