Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL5A1P20908 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL5A1P20908 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL5A1P20908 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
COL5A1P20908 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
COL5A1P20908 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.57■□□□□ 0.24
COL5A1P20908 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.57■□□□□ 0.24
COL5A1P20908 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.57■□□□□ 0.24
COL5A1P20908 RNA5SP421-201ENST00000516864 134 ntBASIC16.57■□□□□ 0.24
COL5A1P20908 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.57■□□□□ 0.24
COL5A1P20908 AL512356.2-201ENST00000546955 174 ntBASIC16.57■□□□□ 0.24
COL5A1P20908 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.57■□□□□ 0.24
COL5A1P20908 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.57■□□□□ 0.24
COL5A1P20908 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.57■□□□□ 0.24
COL5A1P20908 MIR4745-201ENST00000577608 62 ntBASIC16.57■□□□□ 0.24
COL5A1P20908 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL5A1P20908 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL5A1P20908 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.57■□□□□ 0.24
COL5A1P20908 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.57■□□□□ 0.24
COL5A1P20908 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL5A1P20908 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.57■□□□□ 0.24
COL5A1P20908 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.57■□□□□ 0.24
COL5A1P20908 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.57■□□□□ 0.24
COL5A1P20908 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.57■□□□□ 0.24
COL5A1P20908 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL5A1P20908 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
COL5A1P20908 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.57■□□□□ 0.24
COL5A1P20908 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL5A1P20908 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.57■□□□□ 0.24
COL5A1P20908 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL5A1P20908 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL5A1P20908 NOC2LP1-202ENST00000452600 2235 ntBASIC16.57■□□□□ 0.24
COL5A1P20908 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL5A1P20908 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL5A1P20908 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL5A1P20908 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL5A1P20908 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL5A1P20908 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.56■□□□□ 0.24
COL5A1P20908 KLF2P3-201ENST00000451977 1087 ntBASIC16.56■□□□□ 0.24
COL5A1P20908 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
COL5A1P20908 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.56■□□□□ 0.24
COL5A1P20908 AC079140.1-201ENST00000508039 487 ntBASIC16.56■□□□□ 0.24
COL5A1P20908 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.56■□□□□ 0.24
COL5A1P20908 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.56■□□□□ 0.24
COL5A1P20908 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.56■□□□□ 0.24
COL5A1P20908 AC140878.1-201ENST00000565277 250 ntBASIC16.56■□□□□ 0.24
COL5A1P20908 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL5A1P20908 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL5A1P20908 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.56■□□□□ 0.24
COL5A1P20908 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL5A1P20908 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL5A1P20908 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC16.56■□□□□ 0.24
COL5A1P20908 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL5A1P20908 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.56■□□□□ 0.24
COL5A1P20908 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.56■□□□□ 0.24
COL5A1P20908 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL5A1P20908 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL5A1P20908 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
COL5A1P20908 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
COL5A1P20908 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC16.56■□□□□ 0.24
COL5A1P20908 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL5A1P20908 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.56■□□□□ 0.24
COL5A1P20908 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
COL5A1P20908 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
COL5A1P20908 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL5A1P20908 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL5A1P20908 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.56■□□□□ 0.24
COL5A1P20908 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.56■□□□□ 0.24
COL5A1P20908 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.56■□□□□ 0.24
COL5A1P20908 FAM207CP-201ENST00000443486 507 ntBASIC16.56■□□□□ 0.24
COL5A1P20908 DUT-210ENST00000559935 569 ntTSL 3 BASIC16.56■□□□□ 0.24
COL5A1P20908 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL5A1P20908 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
COL5A1P20908 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
COL5A1P20908 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL5A1P20908 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.55■□□□□ 0.24
COL5A1P20908 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.55■□□□□ 0.24
COL5A1P20908 KRT18P55-202ENST00000578578 1546 ntBASIC16.55■□□□□ 0.24
COL5A1P20908 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL5A1P20908 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL5A1P20908 AC008764.6-201ENST00000595909 2069 ntBASIC16.55■□□□□ 0.24
COL5A1P20908 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL5A1P20908 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL5A1P20908 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.55■□□□□ 0.24
COL5A1P20908 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL5A1P20908 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.55■□□□□ 0.24
COL5A1P20908 LINC00304-203ENST00000565008 1864 ntBASIC16.55■□□□□ 0.24
COL5A1P20908 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.55■□□□□ 0.24
COL5A1P20908 AL592309.1-201ENST00000443127 649 ntBASIC16.55■□□□□ 0.24
COL5A1P20908 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.55■□□□□ 0.24
COL5A1P20908 RBM7-207ENST00000544582 692 ntTSL 3 BASIC16.55■□□□□ 0.24
COL5A1P20908 AC243562.1-201ENST00000560672 389 ntBASIC16.55■□□□□ 0.24
COL5A1P20908 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL5A1P20908 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL5A1P20908 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL5A1P20908 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.55■□□□□ 0.24
COL5A1P20908 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.55■□□□□ 0.24
COL5A1P20908 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
COL5A1P20908 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL5A1P20908 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms